Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6346
         (753 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0009 + 24942361-24943842                                         29   5.2  
04_04_0336 + 24500665-24502647                                         28   6.9  

>02_05_0009 + 24942361-24943842
          Length = 493

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 19/73 (26%), Positives = 36/73 (49%)
 Frame = -2

Query: 695 NRYYVCFLCRSYSGRTARSIIKSYKLTYQF*KSHLINSRLFFYCID*PTSPIATYLSSSA 516
           +RY V  L R+ S  +A +++  + L ++    HL  S     C   P+ P+A+ + S A
Sbjct: 38  SRYSVNCLIRAASAPSASALLLRFLLNHRLLPDHLSLSFSLHPCSRLPSHPVASVVHSLA 97

Query: 515 RASWNAVGLPIIN 477
               +A  + ++N
Sbjct: 98  VRLGHARDVYVVN 110


>04_04_0336 + 24500665-24502647
          Length = 660

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 13/41 (31%), Positives = 26/41 (63%)
 Frame = -1

Query: 525 IECSSFLECRRVADYKSAIMLQFHVTHLNRHLSSMKEKIKS 403
           ++ S+FL   ++A YK+ ++L++ +  L RH S +  K+ S
Sbjct: 487 VQASAFL---KLAPYKTPVVLKYGLIQLQRHASIVLSKVLS 524


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,505,547
Number of Sequences: 37544
Number of extensions: 363925
Number of successful extensions: 655
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 655
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)