Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6346
         (753 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81547-1|CAB04459.1|  354|Caenorhabditis elegans Hypothetical pr...    29   3.5  
AC024801-3|AAK68511.3|  852|Caenorhabditis elegans Hypothetical ...    28   8.2  

>Z81547-1|CAB04459.1|  354|Caenorhabditis elegans Hypothetical
           protein F53F8.1 protein.
          Length = 354

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -1

Query: 468 MLQFHVTHLNRHLSSMKEKIKSRPFQKFNSCHSFFEQHN 352
           +++ H  H N    + +E I   P   FN  H F +Q+N
Sbjct: 119 VIEQHYNHHNHVQQTFEENIPQGPHSSFNFSHDFPQQNN 157


>AC024801-3|AAK68511.3|  852|Caenorhabditis elegans Hypothetical
           protein Y50D7A.4 protein.
          Length = 852

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 22/97 (22%), Positives = 43/97 (44%), Gaps = 6/97 (6%)
 Frame = -1

Query: 576 IFLLYRLTDKPYRD-LPVIECSSFLECRRVADYKSAIMLQFHVTHLNRHLSSMKEKIKSR 400
           +F L + T+K Y + +   + +  LE   +   +   +LQ H+   + +LSS  E ++ R
Sbjct: 92  VFGLIQKTEKKYDEAIKAYKRALMLEKDNLQILRDLSLLQIHIRDYDGYLSSKYELLQLR 151

Query: 399 PFQK-----FNSCHSFFEQHNEHYGSIIGFYFNRVQS 304
             Q+     +   H   ++HN   G +  +  N   S
Sbjct: 152 QTQRVSWLGYIVAHHLLKEHNLALGIMAEYIKNNTPS 188


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,816,908
Number of Sequences: 27780
Number of extensions: 353408
Number of successful extensions: 655
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 655
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)