Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6344
         (377 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom...    29   0.32 
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula...    28   0.56 
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    26   1.7  
SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated |Schizosaccharom...    25   3.9  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    25   3.9  
SPAC23C11.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   5.2  
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz...    24   6.9  
SPAC630.05 |gyp7||GTPase activating protein Gyp7 |Schizosaccharo...    24   9.1  
SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces pomb...    24   9.1  
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    24   9.1  

>SPCC63.03 |||DNAJ domain protein, DNAJC11
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 642

 Score = 28.7 bits (61), Expect = 0.32
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = +3

Query: 240 STGSPGRSMPRGISRSSFNSGGTWSYHRSTPNSTIP 347
           S GS G + PRG + SSF+   TW   ++ PNS +P
Sbjct: 311 SLGSWGIASPRG-ANSSFSL--TWQQMKAIPNSLVP 343


>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
           Prp45|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 27.9 bits (59), Expect = 0.56
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -2

Query: 304 PPELKELLEIPRGIDRPGLPVEALKPRLTGANEVNDFQI 188
           PP+ +   ++PRG   P  PV    PR   A E  D+QI
Sbjct: 214 PPKFRHK-KVPRGPPSPPPPVLHSPPRKVSAQEQQDWQI 251


>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 687

 Score = 26.2 bits (55), Expect = 1.7
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +2

Query: 134 VTTAAFYSYLPALKHYGQNLKIIHFIGA 217
           +T   F + +P+L+H G+ L+ I F GA
Sbjct: 212 LTRQVFINSVPSLQHMGELLQCIAFTGA 239


>SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 280

 Score = 25.0 bits (52), Expect = 3.9
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +2

Query: 266 APGYLQEFLQLWWDLVVSQVHAQLDHSMSGVTGN 367
           AP  L EFL++W + V SQ    L+  ++  TGN
Sbjct: 160 APEILLEFLKIWQNHVNSQTALPLE--LTWTTGN 191


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 25.0 bits (52), Expect = 3.9
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +3

Query: 72  THSSLTGRTATSTSIFPSCTTLQLRLSTHI 161
           T SSLT  +ATS+S+  S TT     S+ I
Sbjct: 105 TSSSLTSSSATSSSLASSSTTSSSLASSSI 134


>SPAC23C11.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 110

 Score = 24.6 bits (51), Expect = 5.2
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +2

Query: 203 HFIGAGKPWLQ 235
           HF+  GKPWLQ
Sbjct: 4   HFLFTGKPWLQ 14


>SPBC354.05c |sre2||membrane-tethered transcription factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 793

 Score = 24.2 bits (50), Expect = 6.9
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -1

Query: 290 GTPGDTPGHR 261
           G PG+TPGHR
Sbjct: 537 GPPGNTPGHR 546


>SPAC630.05 |gyp7||GTPase activating protein Gyp7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +2

Query: 65  LLNSFFSDWAHGDINKHLPFLYNVTTAAFYSYLPALKHYGQN 190
           L N    +W   +I +HL + ++V   + YS +     YG N
Sbjct: 98  LSNGSIREWV--EIPQHLDYSFSVRLCSIYSIIFRPPRYGWN 137


>SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 510

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +1

Query: 154 LIFTSFETLRTEFENHSLHW 213
           L F  FE+++ E+E+ S+ W
Sbjct: 60  LFFWMFESVKPEYEHRSILW 79


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 14/22 (63%), Positives = 15/22 (68%)
 Frame = +3

Query: 198 SFTSLAPVSLGFSASTGSPGRS 263
           SFTS  PVSL  S+ST S G S
Sbjct: 272 SFTSSTPVSL-TSSSTSSSGSS 292


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,583,312
Number of Sequences: 5004
Number of extensions: 31246
Number of successful extensions: 94
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)