Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-6344
(377 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1550 + 38191957-38192054,38193084-38193284,38193456-381940... 36 0.014
05_04_0376 - 20754386-20755392,20755683-20756320,20756433-207566... 35 0.018
02_05_0007 + 24918163-24918420,24919360-24919410,24919411-249194... 34 0.043
02_04_0222 - 21034183-21035920,21036484-21036687,21037323-21037345 33 0.099
10_08_0935 + 21670372-21671396,21672057-21672987 29 1.2
03_01_0598 + 4410722-4410988,4411112-4411745,4414612-4415555 29 1.6
07_01_0059 - 439518-439646,439767-439885,440003-440241,440320-44... 28 2.1
09_02_0512 + 10101274-10102248,10102363-10102748,10103807-10104503 27 4.9
02_02_0457 + 10503801-10507358 27 4.9
09_02_0520 - 10160551-10160939,10160986-10161220 27 6.5
07_01_0701 - 5284635-5284970,5285086-5285189,5285509-5285622,528... 27 6.5
04_04_0739 - 27693768-27694305,27694765-27694912,27694987-276951... 27 6.5
03_06_0745 + 35937173-35938256,35938994-35939721 27 6.5
01_01_0542 + 3975500-3975546,3976273-3976370,3976694-3976830,397... 27 6.5
03_01_0403 - 3133568-3134440,3135131-3135494,3136341-3136408,313... 26 8.6
>01_06_1550 +
38191957-38192054,38193084-38193284,38193456-38194090,
38194398-38195419
Length = 651
Score = 35.5 bits (78), Expect = 0.014
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Frame = +2
Query: 41 SFDGGDQGLLNSFFSDWAHGDINKHLPFLYNVTTAAFYSY-LPALKHYGQN---LKIIHF 208
S++GGDQG LN F+ W H I KH+ FL + + + +G + L ++H+
Sbjct: 470 SYNGGDQGYLNEIFT-WWH-RIPKHMNFLKHFWEGDEEEVKVKKTRLFGADPPILYVLHY 527
Query: 209 IGAGKPWL 232
+G KPWL
Sbjct: 528 LGL-KPWL 534
>05_04_0376 -
20754386-20755392,20755683-20756320,20756433-20756627,
20757730-20757795,20757942-20758007,20758402-20758445
Length = 671
Score = 35.1 bits (77), Expect = 0.018
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Frame = +2
Query: 41 SFDGGDQGLLNSFFSDWAHGDINKHLPFLYNVTTAAFYS-YLPALKHYGQN---LKIIHF 208
S++GGDQG LN F+ W H I KH+ FL + S + +G + L ++H+
Sbjct: 495 SYNGGDQGYLNEIFT-WWH-RIPKHMNFLKHFWEGDDDSAKAKKTELFGADPPILYVLHY 552
Query: 209 IGAGKPWL 232
+G KPWL
Sbjct: 553 LGM-KPWL 559
>02_05_0007 +
24918163-24918420,24919360-24919410,24919411-24919480,
24919645-24919830,24920127-24920275,24921310-24921417,
24921501-24921638,24922574-24922853,24922924-24923047,
24923197-24923312,24923612-24923619
Length = 495
Score = 33.9 bits (74), Expect = 0.043
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 13/76 (17%)
Frame = +2
Query: 41 SFDGGDQGLLNSFFSDWAHGDI---NK---------HLPFLYNVTTAAFYSYLPALKHYG 184
S+ GGDQG LNS+++D+A+ + NK L LYN Y
Sbjct: 185 SYTGGDQGFLNSYYADFANSRVYEPNKPTTPEPETQRLSTLYN-ADVGLYMLANKWMVDE 243
Query: 185 QNLKIIHF-IGAGKPW 229
+ L++IH+ +G KPW
Sbjct: 244 KELRVIHYTLGPLKPW 259
>02_04_0222 - 21034183-21035920,21036484-21036687,21037323-21037345
Length = 654
Score = 32.7 bits (71), Expect = 0.099
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Frame = +2
Query: 5 LRKLIQFAQQRGSFDGGDQGLLNSFFSDW----AHGDINKH 115
LR L+ S++GGDQG LN FS W +H + KH
Sbjct: 458 LRLLMDHIADIDSYNGGDQGYLNEVFSWWHRLPSHANFMKH 498
>10_08_0935 + 21670372-21671396,21672057-21672987
Length = 651
Score = 29.1 bits (62), Expect = 1.2
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = +3
Query: 75 HSSL--TGRTATSTSIFPSCTTLQLRLSTHI 161
HSS+ +G AT TSI PSCT L T +
Sbjct: 144 HSSIDSSGAAATVTSIAPSCTVTSLSAKTSV 174
>03_01_0598 + 4410722-4410988,4411112-4411745,4414612-4415555
Length = 614
Score = 28.7 bits (61), Expect = 1.6
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Frame = +2
Query: 8 RKLIQFAQQRGSFDGGDQGLLNSFFSDWAHGDINKHLPFLYNV---TTAAFYSYLPALKH 178
+ LI+ + S++GGDQG LN F W H + + + +L N TTA +
Sbjct: 461 QSLIRQRRTIRSYNGGDQGFLNEVFV-WWH-RLPRRVNYLKNFWANTTAERALKERLFRA 518
Query: 179 YGQNLKIIHFIGAGKPW 229
+ IH++G KPW
Sbjct: 519 DPAEVWSIHYLGL-KPW 534
>07_01_0059 -
439518-439646,439767-439885,440003-440241,440320-440376,
440480-440566,440664-441208,441967-442026,443552-443935,
444049-444114
Length = 561
Score = 28.3 bits (60), Expect = 2.1
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Frame = +2
Query: 83 SDWAHGDINKHLPFLYN---VTTAAFYSYLPALKHYGQNLKIIHFIGAG 220
+ +A+G I L FL VT ++ LP + H+G +H++G G
Sbjct: 245 AQFAYGFIQCTLRFLQTQSVVTPLVVFALLPLVLHFGITHAFVHYLGFG 293
>09_02_0512 + 10101274-10102248,10102363-10102748,10103807-10104503
Length = 685
Score = 27.1 bits (57), Expect = 4.9
Identities = 19/43 (44%), Positives = 23/43 (53%)
Frame = +3
Query: 219 VSLGFSASTGSPGRSMPRGISRSSFNSGGTWSYHRSTPNSTIP 347
V++GFSASTGS + R +S SFNS TW P P
Sbjct: 239 VAVGFSASTGS-SIEVHRVLS-WSFNSTLTWMNSSVMPPGAAP 279
>02_02_0457 + 10503801-10507358
Length = 1185
Score = 27.1 bits (57), Expect = 4.9
Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +1
Query: 142 CGFLLIFTSFETLRTEFENHSLHW-RR*ALASALQLGVPVGRCPGVSPGVPSTL 300
C L F+ + L+ F SL W RR L S LQ + + RC +SP VPS L
Sbjct: 1056 CELLKDFSVLKDLKICF-CPSLKWHRRLVLPSTLQR-LSLTRCGDISPCVPSCL 1107
>09_02_0520 - 10160551-10160939,10160986-10161220
Length = 207
Score = 26.6 bits (56), Expect = 6.5
Identities = 19/43 (44%), Positives = 23/43 (53%)
Frame = +3
Query: 219 VSLGFSASTGSPGRSMPRGISRSSFNSGGTWSYHRSTPNSTIP 347
V++GFSASTGS + R +S SFNS TW P P
Sbjct: 9 VAVGFSASTGS-SIEVHRVLS-WSFNSTLTWMDFSVMPPGAAP 49
>07_01_0701 -
5284635-5284970,5285086-5285189,5285509-5285622,
5285695-5286286
Length = 381
Score = 26.6 bits (56), Expect = 6.5
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +2
Query: 215 AGKPWLQRFNWESRSVDA 268
AG+ W + W+SRS+DA
Sbjct: 263 AGRVWYRAKGWDSRSIDA 280
>04_04_0739 -
27693768-27694305,27694765-27694912,27694987-27695188,
27695802-27695864,27695865-27696120,27697811-27697953
Length = 449
Score = 26.6 bits (56), Expect = 6.5
Identities = 28/92 (30%), Positives = 38/92 (41%), Gaps = 12/92 (13%)
Frame = +2
Query: 14 LIQFAQQRGSFDGGDQGLLNSFFSD-----WAHGDIN-------KHLPFLYNVTTAAFYS 157
L + A R + DG DQG L S+F D H +N LP Y + + +Y
Sbjct: 164 LHELAVGRDNPDGADQGFLASYFPDLLDRPMFHPPVNGTKLEGTYRLPLGYQMDASYYYL 223
Query: 158 YLPALKHYGQNLKIIHFIGAGKPWLQRFNWES 253
L G N +I F A PW + + W S
Sbjct: 224 KLRWSIPCGPN-SVITFPSA--PWFKPWYWWS 252
>03_06_0745 + 35937173-35938256,35938994-35939721
Length = 603
Score = 26.6 bits (56), Expect = 6.5
Identities = 8/20 (40%), Positives = 16/20 (80%)
Frame = -1
Query: 62 LDHHHQNCLAAARIVSVFEG 3
L+HHH+N AA+ +++++G
Sbjct: 358 LNHHHRNLFAASTNITIWDG 377
>01_01_0542 +
3975500-3975546,3976273-3976370,3976694-3976830,
3977518-3977871,3977953-3978041,3978502-3978589,
3978659-3978734,3978858-3978907,3979032-3979340,
3979803-3979982,3980086-3980325,3980471-3980582,
3980931-3981040,3981162-3981311,3981777-3981932,
3982289-3982405,3982759-3982839,3983338-3983478
Length = 844
Score = 26.6 bits (56), Expect = 6.5
Identities = 9/31 (29%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Frame = +2
Query: 239 FNWESRSVDAPG-YLQEFLQLWWDLVVSQVH 328
F + +++DAPG +L E+ ++WD+ +++ +
Sbjct: 52 FCFAKKAIDAPGGFLLEWWSVFWDIFIARTN 82
>03_01_0403 -
3133568-3134440,3135131-3135494,3136341-3136408,
3137184-3137857,3138093-3138105
Length = 663
Score = 26.2 bits (55), Expect = 8.6
Identities = 18/56 (32%), Positives = 24/56 (42%)
Frame = +3
Query: 207 SLAPVSLGFSASTGSPGRSMPRGISRSSFNSGGTWSYHRSTPNSTIP*VA*RATWP 374
S P + FS ST G+S ++ S + S H P+ T P V A WP
Sbjct: 333 SSRPPTARFSPSTTLVGKSPAPAVAYFSSRGPSSISPHILKPDVTAPGVNILAAWP 388
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,036,228
Number of Sequences: 37544
Number of extensions: 227177
Number of successful extensions: 697
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 697
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 612769692
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -