Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6344
         (377 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    23   1.2  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        23   1.6  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   1.6  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   3.6  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   4.8  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    20   8.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    20   8.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    20   8.4  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 23.0 bits (47), Expect = 1.2
 Identities = 14/48 (29%), Positives = 19/48 (39%)
 Frame = +2

Query: 41  SFDGGDQGLLNSFFSDWAHGDINKHLPFLYNVTTAAFYSYLPALKHYG 184
           SF G D  +L      W H   N  L  +   TT    + +   K+YG
Sbjct: 286 SFAGSDVTVLG-----WGHTSFNGMLSHILQKTTLNMLTQVECYKYYG 328


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 22.6 bits (46), Expect = 1.6
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 77  MSSVALDHHHQNCLAAARIVS 15
           M +  L HHHQN    + +VS
Sbjct: 166 MVNYTLGHHHQNGATPSSLVS 186



 Score = 20.2 bits (40), Expect = 8.4
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -1

Query: 77  MSSVALDHHHQNCLAAA 27
           +S+ A  HHHQ   A A
Sbjct: 92  VSAAAAHHHHQQQQAVA 108


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.6 bits (46), Expect = 1.6
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +2

Query: 251 SRSVDAPGYLQEFLQLWWDLVVSQVH 328
           SRS     +LQ F    W LV+  VH
Sbjct: 552 SRSSTLVSFLQPFSNTLWILVMVSVH 577


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.4 bits (43), Expect = 3.6
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = +2

Query: 206 FIGAGKPWLQRFNWESRSVDAPGY 277
           F   GKP  +   W S S D P Y
Sbjct: 532 FAYLGKPTKEDSEWPSYSRDEPKY 555


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.0 bits (42), Expect = 4.8
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +3

Query: 96  TATSTSIFPSC 128
           T+T+TS+ PSC
Sbjct: 91  TSTTTSVTPSC 101


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 20.2 bits (40), Expect = 8.4
 Identities = 11/46 (23%), Positives = 25/46 (54%)
 Frame = -2

Query: 310 QVPPELKELLEIPRGIDRPGLPVEALKPRLTGANEVNDFQILSVMF 173
           ++PP+ +  +++     +PG   +A    LT A+ +  F+  +V+F
Sbjct: 653 KLPPDGRTEIDVAIKTLKPGSADKARNDFLTEASIMGQFEHPNVIF 698


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.2 bits (40), Expect = 8.4
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +3

Query: 72   THSSLTGRTATSTSIFPSCTTLQLRL 149
            T     G    +T + P+ TTL LRL
Sbjct: 1494 TQGQAPGIPPAATFLSPNSTTLVLRL 1519


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.2 bits (40), Expect = 8.4
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +3

Query: 72   THSSLTGRTATSTSIFPSCTTLQLRL 149
            T     G    +T + P+ TTL LRL
Sbjct: 1490 TQGQAPGIPPAATFLSPNSTTLVLRL 1515


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,385
Number of Sequences: 438
Number of extensions: 2078
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9176370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)