Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6342
         (723 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0370 + 22768977-22769523,22769619-22770642,22770784-227711...    29   3.7  
08_02_0189 + 13984892-13984943,13985929-13986480,13986577-139867...    29   3.7  
06_03_0992 - 26680555-26680840,26680893-26681279,26681364-266824...    28   6.5  
01_05_0474 - 22552599-22552687,22553494-22553631,22553766-225544...    28   6.5  

>11_06_0370 +
           22768977-22769523,22769619-22770642,22770784-22771170,
           22771216-22771507
          Length = 749

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = +2

Query: 275 KRFFIKLLGSPQHMSLTYQ--STFGLLPALSRFKANSYMLLMKFIL 406
           K+  +KLLG P   S   +  ST+G + +  R K +S+  L  F+L
Sbjct: 609 KKLALKLLGQPTSSSCAERNWSTYGFIHSSMRNKFSSFSYLFSFLL 654


>08_02_0189 +
           13984892-13984943,13985929-13986480,13986577-13986759,
           13986826-13987006,13987238-13987654,13987742-13988128,
           13988176-13988467
          Length = 687

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = +2

Query: 275 KRFFIKLLGSPQHMSLTYQ--STFGLLPALSRFKANSYMLLMKFIL 406
           K+  +KLLG P   S   +  ST+G + +  R K +S+  L  F+L
Sbjct: 547 KKLALKLLGQPTSSSCAERNWSTYGFIHSSMRNKFSSFSYLFSFLL 592


>06_03_0992 -
           26680555-26680840,26680893-26681279,26681364-26682441,
           26682537-26683083
          Length = 765

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = +2

Query: 275 KRFFIKLLGSPQHMSLTYQ--STFGLLPALSRFKANSYMLLMKFIL 406
           K+  +KLLG P   S   +  ST+GL+    R K  S+  L+ F+L
Sbjct: 627 KKLALKLLGQPTSSSCAERNWSTYGLIHNSMRNKFCSFSYLVNFLL 672


>01_05_0474 -
           22552599-22552687,22553494-22553631,22553766-22554447,
           22555120-22555167,22555395-22556042,22556960-22557310,
           22558622-22558690
          Length = 674

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
 Frame = -3

Query: 544 TPSGMESAIRKFQ*KPKERVRNCRHNDNTRRQRKIDHK--QNESTKLSQNKF 395
           T   M S+ R+    PK     C+ +  T + R   HK  +N S+ + Q KF
Sbjct: 247 TEERMSSSKRQSHKDPKSLSLKCQESTPTNKPRNTSHKKGENNSSSMPQPKF 298


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,612,616
Number of Sequences: 37544
Number of extensions: 220863
Number of successful extensions: 378
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 377
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)