Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6342
         (723 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82051-1|CAB04815.1|  350|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z46793-4|CAA86773.1|  889|Caenorhabditis elegans Hypothetical pr...    29   4.4  
Z34800-5|CAA84325.1|  889|Caenorhabditis elegans Hypothetical pr...    29   4.4  
AF026215-3|AAB71323.3|  563|Caenorhabditis elegans Hypothetical ...    28   7.8  

>Z82051-1|CAB04815.1|  350|Caenorhabditis elegans Hypothetical
           protein T23D5.1 protein.
          Length = 350

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/34 (47%), Positives = 23/34 (67%)
 Frame = +2

Query: 422 FVLFMIYFSLTSCIIVMTTVSDSFLWFSLKFSYR 523
           F +F I FS T  I++M + +  FL+FSLK S+R
Sbjct: 49  FAVFGIGFS-TLDIVIMHSYNGCFLYFSLKGSFR 81


>Z46793-4|CAA86773.1|  889|Caenorhabditis elegans Hypothetical
           protein F45H7.6 protein.
          Length = 889

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
 Frame = -3

Query: 562 MNIQLKTPSGMESAIRKFQ*KPKERVRNCRHNDNTRRQRKIDH----KQNESTKLSQNKF 395
           +N   K  S  +  IR+F+ K   R R+     +T  + KIDH    K  +  K++Q+ F
Sbjct: 390 LNHANKETSFYDPRIRRFETKTSRRGRSVPSRSSTAHKGKIDHALISKCEDLRKIAQDNF 449

Query: 394 HQ 389
            Q
Sbjct: 450 PQ 451


>Z34800-5|CAA84325.1|  889|Caenorhabditis elegans Hypothetical
           protein F45H7.6 protein.
          Length = 889

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
 Frame = -3

Query: 562 MNIQLKTPSGMESAIRKFQ*KPKERVRNCRHNDNTRRQRKIDH----KQNESTKLSQNKF 395
           +N   K  S  +  IR+F+ K   R R+     +T  + KIDH    K  +  K++Q+ F
Sbjct: 390 LNHANKETSFYDPRIRRFETKTSRRGRSVPSRSSTAHKGKIDHALISKCEDLRKIAQDNF 449

Query: 394 HQ 389
            Q
Sbjct: 450 PQ 451


>AF026215-3|AAB71323.3|  563|Caenorhabditis elegans Hypothetical
           protein F09G2.5 protein.
          Length = 563

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -3

Query: 487 VRNCRHNDNTRRQRKIDHK 431
           +R  +HNDNTRRQ++ + K
Sbjct: 25  IRKIQHNDNTRRQQQRNRK 43


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,974,180
Number of Sequences: 27780
Number of extensions: 237372
Number of successful extensions: 511
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)