Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6341
         (481 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    29   0.28 
SPBC16E9.13 |ksp1|ppk20|serine/threonine protein kinase Ksp1 |Sc...    27   1.1  
SPBC3B8.02 |php5||CCAAT-binding factor complex subunit Php5|Schi...    27   1.5  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    26   3.4  
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c...    25   5.9  
SPAC17A2.02c |||DUF887 family protein|Schizosaccharomyces pombe|...    25   5.9  
SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit Alp4|...    25   7.8  

>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1402

 Score = 29.5 bits (63), Expect = 0.28
 Identities = 15/33 (45%), Positives = 22/33 (66%)
 Frame = +2

Query: 140 RKEYSRYF*QFQLRLN*IFRFFLVYRHKQQQKK 238
           R EY  YF +F+ R++ +FR FL    KQ++KK
Sbjct: 184 RTEYISYFRRFKKRISALFRVFLA---KQEEKK 213


>SPBC16E9.13 |ksp1|ppk20|serine/threonine protein kinase Ksp1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
 Frame = -2

Query: 162 KYLEYSLRCVRLPKHNFFFSTLRLQRLRVDRNMFLFYFTDGL---LEVY*VLKY 10
           K L+Y+++C++ P + F      L++L   R+  + +F +     +  Y VL+Y
Sbjct: 36  KDLKYAIKCIKKPAYTFLQEVNILRQLSRSRHRNIIHFVESFEDNVYYYVVLEY 89


>SPBC3B8.02 |php5||CCAAT-binding factor complex subunit
           Php5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 415

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 382 GFRRKPPTPRDFDTNQTLYQR 320
           G  R+P +PR FD  Q LY +
Sbjct: 359 GMSRRPGSPRQFDQQQRLYSQ 379


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 3227

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 62  NIFLSTLNLCSLRVEKKKLCFGKRTHRKEYSRYF 163
           N+F ST N+ S  +  +  C+G   H K+ S  F
Sbjct: 544 NLFASTTNIMSTFIHNEPTCYG-IIHEKKLSHAF 576


>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 807

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = +2

Query: 344 IKVPWGWWFTSKALWWPLCFE 406
           ++V  GWW      W PL  E
Sbjct: 628 LRVSEGWWMIGSQYWGPLASE 648


>SPAC17A2.02c |||DUF887 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 290

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 6/20 (30%), Positives = 13/20 (65%)
 Frame = +2

Query: 308 LNNGPLV*RLVCIKVPWGWW 367
           +N   L+   +C+++ WGW+
Sbjct: 201 INGFILIVTFICVRIAWGWF 220


>SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit
           Alp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 176 LRLN*IFRFFLVYRHKQQQKKN 241
           +R   +FR+FL+ RH + Q +N
Sbjct: 586 IRYQLLFRYFLLLRHVEMQLEN 607


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,938,354
Number of Sequences: 5004
Number of extensions: 39314
Number of successful extensions: 91
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)