Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6341
         (481 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0318 - 2425178-2425267,2425830-2426008,2426594-2426654,242...    30   1.1  
02_04_0073 - 19471254-19472681                                         28   3.4  

>12_01_0318 -
           2425178-2425267,2425830-2426008,2426594-2426654,
           2426851-2427160,2428514-2428777,2432595-2433865
          Length = 724

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = +2

Query: 320 PLV*RLVCI--KVPWGWWFTSKALWWPLCFELYILEID 427
           PL+ RL+    +V W WW  S AL+  + FEL +   D
Sbjct: 219 PLLRRLMLSHPEVEWVWWMDSDALFTDMAFELPLARYD 256


>02_04_0073 - 19471254-19472681
          Length = 475

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = +2

Query: 320 PLV*RLVCI--KVPWGWWFTSKALWWPLCFEL 409
           PL+ RL+    +V W WW  S AL+  + FEL
Sbjct: 230 PLLRRLMLSHPEVEWIWWMDSDALFTDMAFEL 261


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,410,358
Number of Sequences: 37544
Number of extensions: 215768
Number of successful extensions: 378
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 378
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)