Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6334
         (640 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    30   0.32 
SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyc...    27   1.7  
SPAC458.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   2.3  
SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit C...    27   2.3  
SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyc...    26   5.3  
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos...    26   5.3  
SPAC3H8.10 |spo20|sec14|sec14 cytosolic factor family Sec14|Schi...    26   5.3  
SPBC1773.08c |||mannosyltransferase complex subunit |Schizosacch...    25   7.0  
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz...    25   7.0  
SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity prote...    25   9.2  
SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces pomb...    25   9.2  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 29.9 bits (64), Expect = 0.32
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = +3

Query: 129 HEPK--PDIIESPRLTDDERVHILEAKERETGELPPELREKARIELRE 266
           HEP+  P+  + P   DDE   + E +E+E  E   +  E  RI LRE
Sbjct: 383 HEPESEPEDQDEPSEKDDENKDVEEEQEQEQEEEQIDPEEAKRIALRE 430


>SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 852

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = +3

Query: 459 QKLDPLDPKIAAVIDAGYLVPLPKRDAEGRRVVLSCM-GRFDPHLYDSCVMA 611
           QK  P  P +A VID      L     EG + +  C+ GR D    + C+MA
Sbjct: 243 QKEKPPPPPVAVVIDPKLARILRPHQIEGVKFLYKCVTGRID-RCANGCIMA 293


>SPAC458.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 340

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +3

Query: 291 LNQMRHFIEKHPAIKKCRQDAPFLLRFLRTKKYSIP 398
           L Q++H +  H ++   ++   F+L+FLRT   S+P
Sbjct: 158 LKQLKHALGLHTSVDNSQE---FILQFLRTTLLSVP 190


>SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit
           Cwp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 3/29 (10%)
 Frame = +3

Query: 465 LDPLDPKIAAVID---AGYLVPLPKRDAE 542
           +DP+DP++  ++D    G L P+P+ D E
Sbjct: 1   MDPIDPELNEILDFTEYGPLTPIPQDDGE 29


>SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 536

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 8/45 (17%)
 Frame = +3

Query: 96  SVLQPEDCRREHEPKP-DIIESP-------RLTDDERVHILEAKE 206
           S L+PE  RR+HE K  +II+SP        L + E VH L  K+
Sbjct: 2   STLEPEK-RRQHEDKSNEIIDSPIFLNKISALPESENVHCLLLKQ 45


>SPBC17D11.05 |tif32||translation initiation factor
           eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 932

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = +3

Query: 111 EDCRRE-HEPKPDIIESPRLTDDERVHIL-EAKERETGELPPELREKARIELRED 269
           E+  RE HE +    E+ +   +ER     EAKERE  E+  +L  + RI+   D
Sbjct: 803 EEANRELHEQE----EAQKRAIEERTRAAREAKEREQREMAEKLERQRRIQQERD 853


>SPAC3H8.10 |spo20|sec14|sec14 cytosolic factor family
           Sec14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 286

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 342 RQDAPFLLRFLRTKKYSIPQACSM 413
           R D   LLRFLR +K+++ Q+  M
Sbjct: 47  RLDDATLLRFLRARKFNLQQSLEM 70


>SPBC1773.08c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 391

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 20/84 (23%), Positives = 34/84 (40%)
 Frame = +3

Query: 249 RIELREDPILREEALNQMRHFIEKHPAIKKCRQDAPFLLRFLRTKKYSIPQACSMLERYL 428
           RI+ R DP+      N +    + HP     R +A F++    +    +  + + LE++ 
Sbjct: 17  RIDERNDPLFSNGCKN-VHLEAQLHP-----RMNATFVMLARNSDLPGVVSSINSLEKHF 70

Query: 429 TIRQMYPQWFQKLDPLDPKIAAVI 500
                YP  F   +P D K    I
Sbjct: 71  NRHFNYPYTFLNDEPFDEKFKETI 94


>SPAC22E12.11c |set3||histone lysine methyltransferase
           Set3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 494 SYRRRVSSAIAEERRRGEKSGSVLYGTLRS 583
           S+ R   S +  E    EKSGS+ + TLR+
Sbjct: 659 SFHRNSDSKLKLEPSSKEKSGSMFFNTLRT 688


>SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity protein
           kinase Mph1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 678

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 474 LDPKIAAVIDAGYLVPLPKRDAE 542
           L PK+A + D     P+PKR  +
Sbjct: 285 LSPKVAPLFDNSQATPIPKRQQD 307


>SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 224

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +2

Query: 371 PAYKEILYTPGLLDAGTVPDHTTNVPAMVPETGSS 475
           P+Y+E+L   G++D+    +  T+  A  P + SS
Sbjct: 9   PSYEEVLRQEGVIDSPNSSNGQTSTSAGHPSSSSS 43


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,671,967
Number of Sequences: 5004
Number of extensions: 56348
Number of successful extensions: 207
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)