Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-6334
(640 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0423 + 3337401-3337419,3337777-3338235,3338650-3338735,333... 31 0.77
01_06_0403 - 29060712-29060732,29061260-29061334,29061596-290617... 30 1.3
03_02_0536 - 9284079-9286034 30 1.8
07_01_0453 + 3420727-3420800,3421666-3421792,3422348-3422431,342... 29 2.4
05_04_0094 + 17888998-17889589,17889668-17889795,17889879-178901... 29 2.4
08_02_1133 + 24554037-24554043,24554524-24554797,24554890-245549... 29 3.1
04_04_0404 - 24952444-24953094 29 3.1
03_05_1155 + 30808985-30809084,30809531-30809632,30809727-308098... 29 3.1
10_08_0253 - 16196275-16196307,16196425-16196550,16196643-161967... 28 5.4
03_06_0777 + 36181095-36181311,36181444-36181530,36181785-361827... 28 5.4
>12_01_0423 +
3337401-3337419,3337777-3338235,3338650-3338735,
3338974-3339022,3339225-3339533,3339555-3339710,
3339871-3340086,3340404-3340906,3341050-3341116,
3341215-3341272,3341561-3341699,3341840-3341956,
3342069-3342246,3342459-3343093
Length = 996
Score = 31.1 bits (67), Expect = 0.77
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Frame = -1
Query: 544 PSASLFGNGTRYPASITAAIFGSRGSSFWNH---CGYICRMVRYRSSIEQAWGIEYFFVR 374
PS+S FG+ T + A +FG+ S+F + C +C + SS+E+ G+ FV+
Sbjct: 130 PSSSPFGSSTPAFGASPAPVFGATSSTFGSGQTVCNQVCDLY-MTSSVEEFRGLN--FVK 186
Query: 373 RKRNK 359
K +K
Sbjct: 187 DKESK 191
>01_06_0403 -
29060712-29060732,29061260-29061334,29061596-29061762,
29061841-29061996,29062412-29062535,29062949-29063047,
29063155-29063254,29063331-29063380,29063461-29063562,
29063709-29063786,29063865-29064131,29064225-29064321,
29064446-29064746,29066714-29066805,29066890-29067005,
29067445-29067519,29067846-29067911,29068206-29068262,
29068381-29068430,29068518-29068688,29068969-29069060,
29069124-29069281
Length = 837
Score = 30.3 bits (65), Expect = 1.3
Identities = 24/102 (23%), Positives = 46/102 (45%), Gaps = 1/102 (0%)
Frame = +3
Query: 285 EALNQMRHFIEKHPAIKKCRQDAPFLLRFLRTKKYSIPQACSMLERYLTIRQMYPQWFQK 464
EA+ + + + + D +LRFL+ +K+ I +A M L R+ +
Sbjct: 366 EAVQRFHQCLHDEGLLPERHDDYHVMLRFLKARKFDIDKAKHMWSEMLRWRKEFGA--DN 423
Query: 465 LDPLD-PKIAAVIDAGYLVPLPKRDAEGRRVVLSCMGRFDPH 587
++ D ++ V++ Y D EGR V + +G+ DP+
Sbjct: 424 IEEFDYSELDDVLEC-YPQFYHGVDKEGRPVYIELIGKVDPN 464
>03_02_0536 - 9284079-9286034
Length = 651
Score = 29.9 bits (64), Expect = 1.8
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Frame = +3
Query: 105 QPEDCRREHEPKPDIIESPRLT--DDERVHILEAKERETGELPPELREKARIELREDPIL 278
+PE + E EP+PD+ E L +D + E E E PP + ++LRE+ +
Sbjct: 369 EPEPVKEE-EPEPDMNEIKALPAPEDYKEPEPEKVEEEVKPEPPPQPQGDLVDLREETVT 427
Query: 279 REEALNQM 302
+E N++
Sbjct: 428 ADEQGNRL 435
>07_01_0453 +
3420727-3420800,3421666-3421792,3422348-3422431,
3422550-3422644,3423063-3423154,3423326-3423379,
3424221-3424273,3424472-3424539,3424777-3424852,
3425159-3425242,3425793-3425941,3426375-3426492,
3426583-3426699,3426950-3427170,3427503-3427536,
3427585-3427685,3427832-3427943,3428379-3428504,
3428579-3428716,3428808-3428858,3428938-3429050,
3430253-3430318,3430582-3430729,3430826-3430930,
3431017-3431118,3431495-3431567,3431647-3431813,
3431906-3432028
Length = 956
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 450 QWFQKLDPLDPKIAAVIDAGYLVPLPKR 533
QWF +DPL K ++ G L LP+R
Sbjct: 367 QWFVTMDPLAEKALHAVEKGQLTILPER 394
>05_04_0094 +
17888998-17889589,17889668-17889795,17889879-17890139,
17890241-17890503,17890588-17890909
Length = 521
Score = 29.5 bits (63), Expect = 2.4
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -3
Query: 440 LSYGQVPFQHRAGLGYRVFLCTQETQQEW 354
L+Y + F +AG+G + +L T+QEW
Sbjct: 451 LNYRIIEFSDKAGIGVKQYLPNYTTEQEW 479
>08_02_1133 +
24554037-24554043,24554524-24554797,24554890-24554989,
24555089-24555355,24555455-24555532,24555616-24555717,
24555798-24555847,24555916-24556051,24556374-24556490,
24556659-24556818,24557450-24557811,24558075-24558152,
24558274-24558294
Length = 583
Score = 29.1 bits (62), Expect = 3.1
Identities = 28/106 (26%), Positives = 44/106 (41%), Gaps = 4/106 (3%)
Frame = +3
Query: 282 EEALNQMRHFIEKHPAIKKCRQDAPFLLRFLRTKKYSIPQACSMLERYLTIRQMY--PQW 455
E A+ + H + D +LRFL+ +K+ I +A M L R+ +
Sbjct: 66 ERAVAAFHDRLAAHGLLPDKHDDYHMMLRFLKARKFDIDRAMQMWADMLKWREEFGADTI 125
Query: 456 FQKLD--PLDPKIAAVIDAGYLVPLPKRDAEGRRVVLSCMGRFDPH 587
Q D LD ++ GY D EGR V + +G+ DP+
Sbjct: 126 LQDFDFHELD-EVLRYYPQGY----HGVDREGRPVYIERLGKVDPN 166
>04_04_0404 - 24952444-24953094
Length = 216
Score = 29.1 bits (62), Expect = 3.1
Identities = 19/53 (35%), Positives = 27/53 (50%)
Frame = +3
Query: 126 EHEPKPDIIESPRLTDDERVHILEAKERETGELPPELREKARIELREDPILRE 284
EHE K ++ S R DD+RV KE E + + RE+ I R P++ E
Sbjct: 65 EHEGKVHLVVS-RGEDDDRVVAAAGKEEEKEDEDEDPRERVEIGGRLFPVVDE 116
>03_05_1155 +
30808985-30809084,30809531-30809632,30809727-30809800,
30810035-30810051,30810341-30810410,30810498-30810534,
30811010-30811057,30811298-30811385,30811407-30811512,
30812143-30812286
Length = 261
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +2
Query: 500 RRRVSSAIAEERRRGEKSGSVLYGTLRSSLIRQL 601
RRRV++ EERRR ++ + L +R L+R L
Sbjct: 7 RRRVAALDGEERRRRQEEAATLLHRIRDVLLRVL 40
>10_08_0253 -
16196275-16196307,16196425-16196550,16196643-16196741,
16196822-16197001,16197090-16197371,16197471-16199141,
16199257-16199463,16199566-16199700,16199792-16200082,
16200403-16200621,16200876-16201034,16201120-16201181,
16201257-16201383,16201460-16201693,16201777-16202003,
16202163-16202257,16202341-16202468,16202574-16202594,
16202765-16202921,16203007-16203075,16203228-16203341,
16203415-16203491,16203576-16203688,16204432-16204507,
16204592-16204756,16204825-16204952,16205049-16205130,
16205426-16205548,16205633-16205860,16205933-16206034,
16206144-16206341,16206581-16206760,16206868-16207020,
16207690-16207797,16208201-16208355,16208786-16208912,
16209825-16209914,16209986-16210127,16210303-16210379,
16210467-16210582,16210638-16210773,16211130-16211198,
16211279-16211361,16211655-16211720,16211788-16211974,
16212054-16213547,16213635-16214165,16214234-16214363,
16214407-16215878,16216359-16216364,16216750-16217055,
16217364-16217468,16217577-16217772,16217862-16217929,
16218853-16220631,16221026-16221151,16221604-16221780,
16221997-16222128,16223461-16223498,16223710-16223788,
16224175-16224284,16224787-16224935,16225027-16225197,
16225281-16225552,16226355-16226442,16227942-16228369
Length = 5157
Score = 28.3 bits (60), Expect = 5.4
Identities = 21/74 (28%), Positives = 29/74 (39%), Gaps = 2/74 (2%)
Frame = -3
Query: 314 YKMSHLIQSFFSQNWIFSQFDPGFFPKLRRQFTGLSFL--RFQNVYAFIISQPR*FDDVW 141
Y + HL+ F F +F G P GL L Q Y F+ +PR F + W
Sbjct: 140 YLLRHLLNYFKFAPPPFQRFLSGGVPSQIPIKVGLHLLLDATQVSYRFLELEPRVFCEQW 199
Query: 140 LWFVFSSAIFGLED 99
W F ++ D
Sbjct: 200 DWSCFLDLVYSTAD 213
>03_06_0777 +
36181095-36181311,36181444-36181530,36181785-36182725,
36182956-36183006,36183240-36183328,36184975-36185078,
36185179-36185278,36185396-36185471,36185556-36185670,
36185755-36186286,36187032-36187527
Length = 935
Score = 28.3 bits (60), Expect = 5.4
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Frame = +3
Query: 201 KERETGELPPELREKARIE---LREDPILREEALNQMRHFIEKH-PAIKKCRQDAPFLLR 368
KERE E +L E+AR+E LR + + AL + R +E + K R + L+
Sbjct: 664 KEREKIERLEKLAEEARVELDKLRAERVEENNALIRGRASVESEMEVLSKLRSEVEEQLQ 723
Query: 369 FLRTKKYSIPQACSMLERYLT 431
+ +KK I + +E+ T
Sbjct: 724 SVLSKKVEISFEKNRIEKLQT 744
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,482,656
Number of Sequences: 37544
Number of extensions: 378194
Number of successful extensions: 1284
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1284
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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