Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-6334
(640 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U53339-4|AAA96200.1| 298|Caenorhabditis elegans Hypothetical pr... 32 0.40
U41547-2|AAZ32810.1| 129|Caenorhabditis elegans Hypothetical pr... 31 0.70
AF077546-3|AAC26318.3| 347|Caenorhabditis elegans Hypothetical ... 30 1.2
Z81055-4|CAB02893.1| 824|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z83109-11|CAJ43454.1| 345|Caenorhabditis elegans Hypothetical p... 29 3.7
U55374-7|AAP82641.1| 286|Caenorhabditis elegans Uncoordinated p... 28 4.9
U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated p... 28 4.9
U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated p... 28 4.9
AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage ... 28 4.9
Z92777-9|CAJ58495.1| 396|Caenorhabditis elegans Hypothetical pr... 28 6.5
Z81586-5|CAB04696.1| 484|Caenorhabditis elegans Hypothetical pr... 28 6.5
Z46343-6|CAL36520.1| 366|Caenorhabditis elegans Hypothetical pr... 28 6.5
Z46343-5|CAA86458.2| 356|Caenorhabditis elegans Hypothetical pr... 28 6.5
AL132860-32|CAO82074.1| 570|Caenorhabditis elegans Hypothetical... 28 6.5
AL132860-31|CAB60519.2| 457|Caenorhabditis elegans Hypothetical... 28 6.5
Z83238-3|CAB05794.1| 329|Caenorhabditis elegans Hypothetical pr... 27 8.6
U37429-9|AAA79344.3| 796|Caenorhabditis elegans Hypothetical pr... 27 8.6
U21308-14|ABB88222.1| 429|Caenorhabditis elegans Tryptophan hyd... 27 8.6
U21308-13|ABB88221.1| 532|Caenorhabditis elegans Tryptophan hyd... 27 8.6
AF135186-1|AAD30115.1| 532|Caenorhabditis elegans tryptophan hy... 27 8.6
>U53339-4|AAA96200.1| 298|Caenorhabditis elegans Hypothetical
protein F58A6.5 protein.
Length = 298
Score = 31.9 bits (69), Expect = 0.40
Identities = 20/70 (28%), Positives = 30/70 (42%)
Frame = +3
Query: 108 PEDCRREHEPKPDIIESPRLTDDERVHILEAKERETGELPPELREKARIELREDPILREE 287
PED +E DI + + E H+L R +L +L+E LR+ P E
Sbjct: 2 PEDADNGYERLEDITNAVKNEGTEVTHVLRDVIRNYSDLGHDLQEYYDKNLRKFPETVER 61
Query: 288 ALNQMRHFIE 317
N + HF +
Sbjct: 62 TANDVYHFAQ 71
>U41547-2|AAZ32810.1| 129|Caenorhabditis elegans Hypothetical
protein F22A3.7 protein.
Length = 129
Score = 31.1 bits (67), Expect = 0.70
Identities = 18/71 (25%), Positives = 30/71 (42%)
Frame = +3
Query: 126 EHEPKPDIIESPRLTDDERVHILEAKERETGELPPELREKARIELREDPILREEALNQMR 305
++ P PD + + TDD+ +L E + PELR + P RE +
Sbjct: 46 DNGPDPDDVLDQKTTDDDGNFLLSGSSMELTPIDPELRIFHDCNDQGSPCQREWVIRIPA 105
Query: 306 HFIEKHPAIKK 338
+I P +K+
Sbjct: 106 KYITNGPEVKE 116
>AF077546-3|AAC26318.3| 347|Caenorhabditis elegans Hypothetical
protein T08E11.5 protein.
Length = 347
Score = 30.3 bits (65), Expect = 1.2
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +3
Query: 324 PAIKKCRQDAPFLLRFLRTKKYSI 395
P+I+ C + PF+L+FL K+SI
Sbjct: 32 PSIRSCEKKHPFILKFLALNKHSI 55
>Z81055-4|CAB02893.1| 824|Caenorhabditis elegans Hypothetical
protein F01G10.5 protein.
Length = 824
Score = 29.5 bits (63), Expect = 2.1
Identities = 16/44 (36%), Positives = 28/44 (63%)
Frame = +3
Query: 138 KPDIIESPRLTDDERVHILEAKERETGELPPELREKARIELRED 269
K D +S + + E +ILE KE+E+ +L +L E++R LR++
Sbjct: 260 KRDTAKSSQQREQELSNILEEKEKESAQLLQQL-EESRAALRDE 302
>Z83109-11|CAJ43454.1| 345|Caenorhabditis elegans Hypothetical
protein F44G3.12 protein.
Length = 345
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = -3
Query: 368 TQQEWCILTAFFNRRMLLYKMSHLIQSFFSQNWI 267
+++ WCI F + + K+S L++S SQN+I
Sbjct: 91 SEKAWCIRFINFMNGLKIRKVSRLLRSAISQNYI 124
>U55374-7|AAP82641.1| 286|Caenorhabditis elegans Uncoordinated
protein 2, isoform d protein.
Length = 286
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 219 ELPPELREKARIELREDPILREEALNQMRHFIEKH 323
E PP R + ++ +R DPI+R N M H H
Sbjct: 22 ESPPSSRSEYQMSIR-DPIIRRNRYNTMEHSRSSH 55
>U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated
protein 2, isoform c protein.
Length = 1926
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 219 ELPPELREKARIELREDPILREEALNQMRHFIEKH 323
E PP R + ++ +R DPI+R N M H H
Sbjct: 1662 ESPPSSRSEYQMSIR-DPIIRRNRYNTMEHSRSSH 1695
>U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated
protein 2, isoform b protein.
Length = 2027
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 219 ELPPELREKARIELREDPILREEALNQMRHFIEKH 323
E PP R + ++ +R DPI+R N M H H
Sbjct: 1763 ESPPSSRSEYQMSIR-DPIIRRNRYNTMEHSRSSH 1796
>AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage
activated calciumchannel alpha-1 subunit protein.
Length = 2027
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 219 ELPPELREKARIELREDPILREEALNQMRHFIEKH 323
E PP R + ++ +R DPI+R N M H H
Sbjct: 1763 ESPPSSRSEYQMSIR-DPIIRRNRYNTMEHSRSSH 1796
>Z92777-9|CAJ58495.1| 396|Caenorhabditis elegans Hypothetical
protein C17H1.14 protein.
Length = 396
Score = 27.9 bits (59), Expect = 6.5
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Frame = +3
Query: 126 EHEPKPDIIESPRLTDDERVHILEAKERETGELPP--ELREKARIELREDPILREEALNQ 299
+ + + D+ ES R ++ER + RE L L + R+ELR+ + R+ A
Sbjct: 26 QEQRRRDLEESERRAEEERRQYDRERRREQERLEALQRLEDALRMELRQRELERQLAAQA 85
Query: 300 MRHFIEK 320
+ IEK
Sbjct: 86 EKDRIEK 92
>Z81586-5|CAB04696.1| 484|Caenorhabditis elegans Hypothetical
protein T05F1.7 protein.
Length = 484
Score = 27.9 bits (59), Expect = 6.5
Identities = 29/130 (22%), Positives = 61/130 (46%), Gaps = 7/130 (5%)
Frame = +3
Query: 111 EDCRREHEPKPDIIESPRLTDDERVHILEAKERETGELPPELREKARIELREDPILREEA 290
++C+RE + + L + E + I E +E PP L E + ++ + ++E
Sbjct: 335 DECQREADRA-----AQNLRNAENIRISELNRQERKLQPPTLVESKDEKREKEYLEKKEK 389
Query: 291 LNQMRHFIEK-----HPAIKKCRQDAPFLLRFLRT-KKYSIPQ-ACSMLERYLTIRQMYP 449
L + IEK +++ R+ + FL R L++ + ++ Q +E+ IR +
Sbjct: 390 LAEKIKQIEKSTDEQKTELERIRKRSEFLKRQLKSYSELNLVQFENEKIEKGTEIRMLKK 449
Query: 450 QWFQKLDPLD 479
QW +++ L+
Sbjct: 450 QWHEQIMALN 459
>Z46343-6|CAL36520.1| 366|Caenorhabditis elegans Hypothetical
protein T23F11.3b protein.
Length = 366
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +1
Query: 124 ENTNQSQTSSNHRG*LMMNAYTFWKRRNERPVNCRLSFGKKPGSN 258
++ S++SSN + ++M + W +RN +PV R S K S+
Sbjct: 39 DSNTSSRSSSNAKESVLMQGWN-WSKRNIQPVMSRRSLPKSGSSS 82
>Z46343-5|CAA86458.2| 356|Caenorhabditis elegans Hypothetical
protein T23F11.3a protein.
Length = 356
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +1
Query: 124 ENTNQSQTSSNHRG*LMMNAYTFWKRRNERPVNCRLSFGKKPGSN 258
++ S++SSN + ++M + W +RN +PV R S K S+
Sbjct: 39 DSNTSSRSSSNAKESVLMQGWN-WSKRNIQPVMSRRSLPKSGSSS 82
>AL132860-32|CAO82074.1| 570|Caenorhabditis elegans Hypothetical
protein Y56A3A.7b protein.
Length = 570
Score = 27.9 bits (59), Expect = 6.5
Identities = 23/78 (29%), Positives = 37/78 (47%)
Frame = +3
Query: 114 DCRREHEPKPDIIESPRLTDDERVHILEAKERETGELPPELREKARIELREDPILREEAL 293
D RE +P E L D++RV ++ + +E +L E +EK R E+RE+ E
Sbjct: 239 DENREIDPAA---EEALLDDNQRVPVI-VETQEKPDLNDEEKEKRREEIRENIKKEMEKK 294
Query: 294 NQMRHFIEKHPAIKKCRQ 347
Q+ I + A R+
Sbjct: 295 EQVNTLIREKLASMNARR 312
>AL132860-31|CAB60519.2| 457|Caenorhabditis elegans Hypothetical
protein Y56A3A.7a protein.
Length = 457
Score = 27.9 bits (59), Expect = 6.5
Identities = 23/78 (29%), Positives = 37/78 (47%)
Frame = +3
Query: 114 DCRREHEPKPDIIESPRLTDDERVHILEAKERETGELPPELREKARIELREDPILREEAL 293
D RE +P E L D++RV ++ + +E +L E +EK R E+RE+ E
Sbjct: 239 DENREIDPAA---EEALLDDNQRVPVI-VETQEKPDLNDEEKEKRREEIRENIKKEMEKK 294
Query: 294 NQMRHFIEKHPAIKKCRQ 347
Q+ I + A R+
Sbjct: 295 EQVNTLIREKLASMNARR 312
>Z83238-3|CAB05794.1| 329|Caenorhabditis elegans Hypothetical
protein T08G3.3 protein.
Length = 329
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 159 PRLTDDERVHILEAKERETGELPPELREKARI 254
P + + RV +LEA R+ LPPE+ + R+
Sbjct: 156 PVIDNPNRVEVLEASHRKFPCLPPEIIDNPRL 187
>U37429-9|AAA79344.3| 796|Caenorhabditis elegans Hypothetical
protein F09E5.5 protein.
Length = 796
Score = 27.5 bits (58), Expect = 8.6
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Frame = +3
Query: 117 CRREHEPKPDIIESPRLTDDERVHILEAKERETGELPPELREKARIELREDPILREEALN 296
CRR E + +E L A E G P+LR A+ L++ P+L LN
Sbjct: 328 CRRLREVASEHLEKSELVQLMSWIKFYASEDMLGH--PKLRINAQAILQDSPVLSRSTLN 385
Query: 297 QM-RHFIE 317
Q+ F+E
Sbjct: 386 QLCDQFVE 393
>U21308-14|ABB88222.1| 429|Caenorhabditis elegans Tryptophan
hydroxylase protein1, isoform b protein.
Length = 429
Score = 27.5 bits (58), Expect = 8.6
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = -3
Query: 494 CSYLRVKRIQFLEPLRVHLSYGQVPFQHRAGLGYRVFLCTQ 372
C +L+ K + P+ +LS AGL YRVF CTQ
Sbjct: 195 CKFLKAKTGFRVRPVAGYLSARDF----LAGLAYRVFFCTQ 231
>U21308-13|ABB88221.1| 532|Caenorhabditis elegans Tryptophan
hydroxylase protein1, isoform a protein.
Length = 532
Score = 27.5 bits (58), Expect = 8.6
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = -3
Query: 494 CSYLRVKRIQFLEPLRVHLSYGQVPFQHRAGLGYRVFLCTQ 372
C +L+ K + P+ +LS AGL YRVF CTQ
Sbjct: 298 CKFLKAKTGFRVRPVAGYLSARDF----LAGLAYRVFFCTQ 334
>AF135186-1|AAD30115.1| 532|Caenorhabditis elegans tryptophan
hydroxylase protein.
Length = 532
Score = 27.5 bits (58), Expect = 8.6
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = -3
Query: 494 CSYLRVKRIQFLEPLRVHLSYGQVPFQHRAGLGYRVFLCTQ 372
C +L+ K + P+ +LS AGL YRVF CTQ
Sbjct: 298 CKFLKAKTGFRVRPVAGYLSARDF----LAGLAYRVFFCTQ 334
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,914,543
Number of Sequences: 27780
Number of extensions: 322231
Number of successful extensions: 1073
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1017
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1073
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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