Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6334
         (640 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.1  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   5.8  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   7.6  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   7.6  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 556 TTLLPSASLFGNGTRYPASITA 491
           TT LP+AS  G G   P+++ A
Sbjct: 225 TTTLPAASATGTGPATPSAVVA 246


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 13/60 (21%), Positives = 27/60 (45%)
 Frame = -3

Query: 494 CSYLRVKRIQFLEPLRVHLSYGQVPFQHRAGLGYRVFLCTQETQQEWCILTAFFNRRMLL 315
           C Y R+K+   +   R  + +G+VP + +A +   +   +    QE  +     + + LL
Sbjct: 120 CQYCRLKKCIAVGMSRDAVRFGRVPKREKARILAAMQQSSHSRSQEKAVAAELEDEQRLL 179


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 11/50 (22%), Positives = 23/50 (46%)
 Frame = +3

Query: 369 FLRTKKYSIPQACSMLERYLTIRQMYPQWFQKLDPLDPKIAAVIDAGYLV 518
           F  T  YS         R+ ++     ++   ++ L+ ++   ID+GYL+
Sbjct: 297 FYSTIMYSNGVTFPQRNRFSSLPYYKYKYLNVINALEMRLMDAIDSGYLI 346


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 11/50 (22%), Positives = 23/50 (46%)
 Frame = +3

Query: 369 FLRTKKYSIPQACSMLERYLTIRQMYPQWFQKLDPLDPKIAAVIDAGYLV 518
           F  T  YS         R+ ++     ++   ++ L+ ++   ID+GYL+
Sbjct: 297 FYSTIMYSNGVTFPQRNRFSSLPYYKYKYLNVINALEMRLMDAIDSGYLI 346


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,886
Number of Sequences: 438
Number of extensions: 4037
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)