Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-6332
(743 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 27 2.8
SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces pombe... 26 4.9
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy... 26 4.9
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 26 6.5
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 26 6.5
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 26 6.5
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 26 6.5
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 26 6.5
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 26 6.5
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 26 6.5
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 26 6.5
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 26 6.5
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 26 6.5
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 26 6.5
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 27.1 bits (57), Expect = 2.8
Identities = 16/43 (37%), Positives = 25/43 (58%)
Frame = +1
Query: 382 STAQAWMPDSNARIHVKYGDENSEQFVGNATAPDHFRILDRDD 510
S +QA+ D + +HVK +E Q +GNA D + +DRD+
Sbjct: 4302 SQSQAF--DDSEFMHVKEDEEEDLQALGNA-EKDQIKSIDRDE 4341
>SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 570
Score = 26.2 bits (55), Expect = 4.9
Identities = 11/49 (22%), Positives = 23/49 (46%)
Frame = +1
Query: 457 FVGNATAPDHFRILDRDDFSIIVGGRNTVYNLSLYDLSENVDQRLEWQS 603
++G+ T P + D +I+GG + +N + + Q +E+ S
Sbjct: 267 YIGSLTEPSIKERAESTDLLLIIGGLRSDFNSGTFTYATPASQTIEFHS 315
>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 991
Score = 26.2 bits (55), Expect = 4.9
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +1
Query: 424 HVKYGDENSEQFVGNATAPDHFRILDRDDF 513
HV YG + +G AT HFR+L D F
Sbjct: 229 HVVYGLDADLIMLGLATHEPHFRVLREDVF 258
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 6.5
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 571 ENVDQRLEWQSTEAHKELCQLKG 639
EN+D+ L+W+ + KEL Q G
Sbjct: 625 ENIDKVLQWKQPKNRKELRQFLG 647
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 6.5
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 571 ENVDQRLEWQSTEAHKELCQLKG 639
EN+D+ L+W+ + KEL Q G
Sbjct: 625 ENIDKVLQWKQPKNRKELRQFLG 647
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 6.5
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 571 ENVDQRLEWQSTEAHKELCQLKG 639
EN+D+ L+W+ + KEL Q G
Sbjct: 625 ENIDKVLQWKQPKNRKELRQFLG 647
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 6.5
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 571 ENVDQRLEWQSTEAHKELCQLKG 639
EN+D+ L+W+ + KEL Q G
Sbjct: 625 ENIDKVLQWKQPKNRKELRQFLG 647
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 6.5
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 571 ENVDQRLEWQSTEAHKELCQLKG 639
EN+D+ L+W+ + KEL Q G
Sbjct: 625 ENIDKVLQWKQPKNRKELRQFLG 647
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 6.5
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 571 ENVDQRLEWQSTEAHKELCQLKG 639
EN+D+ L+W+ + KEL Q G
Sbjct: 625 ENIDKVLQWKQPKNRKELRQFLG 647
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 6.5
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 571 ENVDQRLEWQSTEAHKELCQLKG 639
EN+D+ L+W+ + KEL Q G
Sbjct: 625 ENIDKVLQWKQPKNRKELRQFLG 647
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 6.5
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 571 ENVDQRLEWQSTEAHKELCQLKG 639
EN+D+ L+W+ + KEL Q G
Sbjct: 625 ENIDKVLQWKQPKNRKELRQFLG 647
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 6.5
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 571 ENVDQRLEWQSTEAHKELCQLKG 639
EN+D+ L+W+ + KEL Q G
Sbjct: 625 ENIDKVLQWKQPKNRKELRQFLG 647
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 6.5
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 571 ENVDQRLEWQSTEAHKELCQLKG 639
EN+D+ L+W+ + KEL Q G
Sbjct: 625 ENIDKVLQWKQPKNRKELRQFLG 647
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 6.5
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 571 ENVDQRLEWQSTEAHKELCQLKG 639
EN+D+ L+W+ + KEL Q G
Sbjct: 625 ENIDKVLQWKQPKNRKELRQFLG 647
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,120,321
Number of Sequences: 5004
Number of extensions: 63084
Number of successful extensions: 160
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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