Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6332
         (743 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0300 + 20624757-20625918,20626100-20627118,20627212-20627592     29   5.2  
09_04_0149 - 15108796-15109353,15109590-15110756,15111571-151116...    28   9.0  
09_02_0508 + 10045717-10045923,10046600-10046860,10046962-10047120     28   9.0  
02_03_0085 + 15063444-15063889,15064324-15065311                       28   9.0  

>01_05_0300 + 20624757-20625918,20626100-20627118,20627212-20627592
          Length = 853

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 17/76 (22%), Positives = 35/76 (46%)
 Frame = +1

Query: 460 VGNATAPDHFRILDRDDFSIIVGGRNTVYNLSLYDLSENVDQRLEWQSTEAHKELCQLKG 639
           V  A +PD  ++++ DD   I   RN+ Y     ++ E  D+  E  S+ +   L  +  
Sbjct: 567 VSAAVSPDELQLVEHDDHRAIAPARNS-YTC---EIEEEEDEEKELPSSSSSSSLALVVA 622

Query: 640 KSPDECQNYPRIAVRA 687
             P++     ++ ++A
Sbjct: 623 APPEQRTTASKMDIQA 638


>09_04_0149 -
           15108796-15109353,15109590-15110756,15111571-15111640,
           15113747-15113808
          Length = 618

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 17/59 (28%), Positives = 30/59 (50%)
 Frame = +1

Query: 565 LSENVDQRLEWQSTEAHKELCQLKGKSPDECQNYPRIAVRAHGPLPRFVARTLSNHNAG 741
           + E + +R+ +Q  +A  +   L   SP +  +  ++    H  + RFVART  +HN G
Sbjct: 307 VKEELMRRISFQLHKASVKDLLLPAASPSDGAHDVKLV---HNLVQRFVARTAMSHNGG 362


>09_02_0508 + 10045717-10045923,10046600-10046860,10046962-10047120
          Length = 208

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = +1

Query: 559 YDLSENVDQRLEW-QSTEAH-KELCQLKGKSPDECQNYPR 672
           Y+L E++ Q  EW Q+T+A    +  L  + PD+ Q Y R
Sbjct: 159 YNLEEHIAQAQEWQQTTDAQFTNINNLMQQKPDDLQTYFR 198


>02_03_0085 + 15063444-15063889,15064324-15065311
          Length = 477

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -1

Query: 539 VFLPPTIIEKSSLSKIRKWSGAVALPTNCS 450
           VF P   IE SS  KI +    + +PT CS
Sbjct: 420 VFAPDATIEVSSPRKIAEMDLVIVMPTGCS 449


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,888,611
Number of Sequences: 37544
Number of extensions: 431765
Number of successful extensions: 1184
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1184
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)