Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6332
         (743 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   2.3  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    23   3.0  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   4.0  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   9.2  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                21   9.2  

>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = -2

Query: 250 SSQNDIREHHKNISLNNVFTHNQLLQTLCDTETTSLQI 137
           +S ND +  +KN + N+  +H  L   L  T T ++ +
Sbjct: 106 TSSNDPKNQYKNQNNNHYTSHQHLRTHLRGTLTVNVSV 143


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 11/56 (19%), Positives = 26/56 (46%)
 Frame = +1

Query: 496 LDRDDFSIIVGGRNTVYNLSLYDLSENVDQRLEWQSTEAHKELCQLKGKSPDECQN 663
           LDR +  ++    +T+  +    + +NV Q     +T+ ++ L  L  ++ +   N
Sbjct: 334 LDRQNIDVVARNEDTLQMVVSMKIKQNVPQSGRVNNTQRNEYLLALSDRNQNVLNN 389


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 736 HCGLKAFVPQNEEAGRALAQQSGDNFD 656
           H G    VPQ  ++ +  +QQ+GD  D
Sbjct: 27  HYGAAVQVPQQTQSVQQQSQQAGDPCD 53


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = -1

Query: 521 IIEKSSLSKIRKWSGAVALPTNCSEFSSPYFTWIRAFE 408
           I+  S+L ++ K       P NC++  S + T    FE
Sbjct: 296 IVLTSALQEMNKSKSITEPPKNCADSGSIWETGKNLFE 333


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -2

Query: 220 KNISLNNVFTHNQLLQTLCDT 158
           KN+  NN+ T NQL     DT
Sbjct: 34  KNVYKNNIETKNQLSPFNIDT 54


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,024
Number of Sequences: 438
Number of extensions: 4523
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)