Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6331
         (716 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B9.03 |||signal recognition particle receptor alpha subunit...    67   2e-12
SPAC19D5.11c |ctf8||DNA replication factor C complex subunit Ctf...    29   0.50 
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    28   1.5  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    26   4.7  
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M...    26   4.7  
SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|...    26   4.7  
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po...    26   4.7  
SPAC23A1.04c |mnl1||alpha mannosidase-like protein|Schizosacchar...    26   6.2  
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    26   6.2  
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual    26   6.2  
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|...    25   8.2  
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos...    25   8.2  

>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
           Srp101|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 67.3 bits (157), Expect = 2e-12
 Identities = 47/173 (27%), Positives = 84/173 (48%), Gaps = 9/173 (5%)
 Frame = +2

Query: 83  MLDLFSIFSKGGIVLWCFQSTSEIFSPSVNALIRSVILQE-RSGNNTFNHNALTLQYKLD 259
           M+DLF+I +KGGIVLW  ++ S +    +  L     L E R+ NNT   +  T+QY+  
Sbjct: 1   MIDLFAIVNKGGIVLWK-KTNSLVNLKCLQVLFHEAFLSEQRTVNNTVTFDRYTMQYQEA 59

Query: 260 NEFELVFVVAYQRILQLSYVDKFLNDVHLEFRDKYKNELQTGPCIVDFNFKTTFDKVL-- 433
            ++ +VFVV +Q +  ++Y    LN  H  F + +K +L+      +   +  F  +   
Sbjct: 60  TQYSIVFVVVFQDLKCMAYSQSLLNSAHNIFLNLFKEKLEDRQVPNEAEVEKLFAPIFNR 119

Query: 434 KECEIWAKSQAK-IPKQMRTFEDSQKS-----KKTVASMIERKGDEKGKKTVK 574
           K  ++  ++  K +P +      ++K      KK  A   +    +KGKK ++
Sbjct: 120 KSAQLENETDTKSLPVEANNDNSARKKNEYEMKKKGAQSKQTNAPKKGKKQLR 172


>SPAC19D5.11c |ctf8||DNA replication factor C complex subunit
           Ctf8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 109

 Score = 29.5 bits (63), Expect = 0.50
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = +2

Query: 521 VASMIERKGDEKGKKTVKIVESKNLTNGKAEEVTNNTYDDDVIAANRAKLA 673
           V + +ERK D      +KI++ KN    KA     N Y + V+ + +  LA
Sbjct: 19  VQATLERKADSLHIGDLKIIKEKNSEKKKATLTVGNQYMEGVVESLKKPLA 69


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 2/89 (2%)
 Frame = -3

Query: 576  ILTVFFPFSSPLR-SIIDATVFLDFWESSKVLICFGILACDFAHISHSFSTLSKVVLKLK 400
            +LT+F+P   P+  + +  ++FL       + IC  +    F +  HSF  +  VV+ L 
Sbjct: 1285 LLTIFYP--CPIAYTYVRNSIFLILSICYTINICVKVYGLSFYYFFHSFWNMFDVVVTLG 1342

Query: 399  S-TIQGPVWSSFLYLSLNSKWTSLRNLST 316
            S T    + + F   SL    T+L  L T
Sbjct: 1343 SLTCNIAILAKFENRSLTLLQTTLLVLVT 1371


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2812

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +2

Query: 179 IRSVILQERSGNNTFNHNALTLQYKLDNEFELVFVVA 289
           +RS I+  R+GN+    +AL ++  +   FEL + ++
Sbjct: 26  LRSYIIYSRNGNSLNQEDALIIEKAIKRAFELEWQIS 62


>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 468

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 13/54 (24%), Positives = 25/54 (46%)
 Frame = +2

Query: 410 KTTFDKVLKECEIWAKSQAKIPKQMRTFEDSQKSKKTVASMIERKGDEKGKKTV 571
           KT  D +  +     +      +  RT+E  Q++K+     +ER+  EK K+ +
Sbjct: 215 KTALDDLYNQRRALQREYDTQLRAFRTYEREQRAKRQEQFRLERENREKEKRRI 268


>SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 21/60 (35%), Positives = 26/60 (43%)
 Frame = +2

Query: 167 VNALIRSVILQERSGNNTFNHNALTLQYKLDNEFELVFVVAYQRILQLSYVDKFLNDVHL 346
           +  L   V+ Q  +  N F     TLQY  D    + +   Y R L  S V KFL D HL
Sbjct: 35  IPTLWEKVVFQNEAQLNNFFD---TLQYSKD----VSYYFRYLRKLNCSRVRKFLTDKHL 87


>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 646

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -3

Query: 453 AHISHSFSTLSKVVLKLKSTI 391
           AHI H  STLS  +LKL   I
Sbjct: 65  AHIDHGKSTLSDCILKLTGVI 85


>SPAC23A1.04c |mnl1||alpha mannosidase-like
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +2

Query: 611 EEVTNNTYDDDVIAANRAKLAQK 679
           E VTNN Y  D+I  N+ K  QK
Sbjct: 569 ERVTNNVYISDII-GNKLKFVQK 590


>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +2

Query: 425 KVLKECEIWAKSQAKIPKQMRTFEDSQK 508
           K+LK C+IW K+    P+++ +     K
Sbjct: 121 KILKLCDIWEKASTFPPEKLESLRSKLK 148


>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 978

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 10/42 (23%), Positives = 25/42 (59%)
 Frame = -3

Query: 399 STIQGPVWSSFLYLSLNSKWTSLRNLSTYDNWSMRWYATTKT 274
           ++I   ++SS++Y ++ S  ++   LS  ++W +  +A  +T
Sbjct: 424 NSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYET 465


>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 828

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +2

Query: 521 VASMIER-KGDEKGKKTVKIVESKNLTNGKAEEVTNN 628
           V+S IE   GDE G  T  +VE+   T    +E T +
Sbjct: 763 VSSQIENINGDENGNTTSSVVETFEKTTDVVDEKTTS 799


>SPAC694.06c |mrc1||mediator of replication checkpoint 1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1019

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 503 QKSKKTVASMIERKGDEKGKKTVKIVESKNLTNG 604
           QK+ + V    +  GD  G   +KI ES + +NG
Sbjct: 521 QKNSRVVFDEEDLTGDSHGSSNMKISESDDESNG 554


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,864,461
Number of Sequences: 5004
Number of extensions: 57302
Number of successful extensions: 209
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)