Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6331
         (716 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC199169-1|ABO33259.1|  450|Caenorhabditis elegans Hypothetical ...   114   7e-26
Z73102-17|CAA97418.2|  375|Caenorhabditis elegans Hypothetical p...    30   1.4  
Z46242-7|CAA86336.1| 1549|Caenorhabditis elegans Hypothetical pr...    29   4.4  
U80454-6|AAB37879.1|  786|Caenorhabditis elegans Hypothetical pr...    29   4.4  
U21323-7|AAA62551.1|  465|Caenorhabditis elegans Hypothetical pr...    28   5.8  
Z66513-12|CAI46602.1|  492|Caenorhabditis elegans Hypothetical p...    28   7.7  
Z66513-11|CAA91332.3|  427|Caenorhabditis elegans Hypothetical p...    28   7.7  
U80837-7|AAB37907.1|  760|Caenorhabditis elegans Hypothetical pr...    28   7.7  
U67952-1|AAB07577.2|  414|Caenorhabditis elegans Hypothetical pr...    28   7.7  
AC024776-11|AAK68461.1|  349|Caenorhabditis elegans Hypothetical...    28   7.7  

>AC199169-1|ABO33259.1|  450|Caenorhabditis elegans Hypothetical
           protein F38A1.8 protein.
          Length = 450

 Score =  114 bits (274), Expect = 7e-26
 Identities = 62/175 (35%), Positives = 103/175 (58%), Gaps = 8/175 (4%)
 Frame = +2

Query: 83  MLDLFSIFSKGGIVLWCFQSTSEIFSPSVN-ALIRSVILQERSGNNTFNHNALTLQYKLD 259
           M++LFSIF+KGG+ LW +Q     F+ ++N  LI+  +++ER  +        T++++LD
Sbjct: 1   MIELFSIFTKGGVCLWNYQEGDYNFTEAINNELIKGTLMEERGNSGQKKVGNYTMKFQLD 60

Query: 260 NEFELVFVVAYQRILQLSYVDKFLNDVHLEFRDKYKNELQ------TGPCIVDFNFKTTF 421
           NE+ ++F+V YQ I+ L+Y +K LN V   FR ++   L+      T P  +  NF  TF
Sbjct: 61  NEYNVIFLVIYQTIVNLNYAEKLLNLVVDSFRGEFSENLREETALTTPPSNIYGNFDETF 120

Query: 422 DKVLKECEIWAKSQAKIPKQMRTFEDSQKSKKTVASMI-ERKGDEKGKKTVKIVE 583
            +VL E    A++     K+ +TF++S KS+KT+ S+I  R G +  +K+ K  E
Sbjct: 121 HEVLSEAAKSARATENTVKKPKTFQESAKSQKTIDSLIVSRPGQKNAEKSAKNAE 175


>Z73102-17|CAA97418.2|  375|Caenorhabditis elegans Hypothetical
           protein B0035.16 protein.
          Length = 375

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = +2

Query: 308 LSYVDKFLNDVHLEFRDKYKNELQTGPCIVDFNFKTTFD 424
           +++V ++ NDV L+F + YKN   T P I D N    FD
Sbjct: 69  VNFVKEYWNDVFLKFLENYKNGRTTVPDI-DCNQSIKFD 106


>Z46242-7|CAA86336.1| 1549|Caenorhabditis elegans Hypothetical
           protein F35G12.8 protein.
          Length = 1549

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +2

Query: 455 KSQAKIPKQMRTFEDSQKSKKTVASMIERKGDEKGKKTVKI 577
           K  AK+    +T ED QK    +   +E+K DE G++  K+
Sbjct: 857 KEAAKVKVDAKTLEDKQK----IVEELEKKRDELGEEAAKV 893


>U80454-6|AAB37879.1|  786|Caenorhabditis elegans Hypothetical
           protein T16A1.2 protein.
          Length = 786

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = -3

Query: 399 STIQGPVWSSFLYLSLNSKWTSLRNLSTYDNWSMRWY 289
           +TIQ  +W+S   LS++S+     ++S   NW++ W+
Sbjct: 118 NTIQ-LIWNSIGNLSIHSEQIRWNDVSDISNWNIEWF 153


>U21323-7|AAA62551.1|  465|Caenorhabditis elegans Hypothetical
           protein C45G9.8 protein.
          Length = 465

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 16/49 (32%), Positives = 20/49 (40%)
 Frame = +2

Query: 422 DKVLKECEIWAKSQAKIPKQMRTFEDSQKSKKTVASMIERKGDEKGKKT 568
           D VL EC   + S   +P    T   S   KKT     +    +K KKT
Sbjct: 85  DSVLTECATMSTSTHVMPNSSSTISKSATEKKTKTGSKKVTRSKKSKKT 133


>Z66513-12|CAI46602.1|  492|Caenorhabditis elegans Hypothetical
           protein F54D5.5b protein.
          Length = 492

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +2

Query: 401 FNFKTTFDKVLKECEIWAKSQAKIPKQMRTFEDS 502
           F++    DKV KE + + K  ++  KQ+  F++S
Sbjct: 291 FHYMNQLDKVKKERDCYRKELSRCKKQLEAFQNS 324


>Z66513-11|CAA91332.3|  427|Caenorhabditis elegans Hypothetical
           protein F54D5.5a protein.
          Length = 427

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +2

Query: 401 FNFKTTFDKVLKECEIWAKSQAKIPKQMRTFEDS 502
           F++    DKV KE + + K  ++  KQ+  F++S
Sbjct: 226 FHYMNQLDKVKKERDCYRKELSRCKKQLEAFQNS 259


>U80837-7|AAB37907.1|  760|Caenorhabditis elegans Hypothetical
           protein F07E5.8 protein.
          Length = 760

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/37 (29%), Positives = 23/37 (62%)
 Frame = -3

Query: 399 STIQGPVWSSFLYLSLNSKWTSLRNLSTYDNWSMRWY 289
           +TIQ  +W+S   LS++S+     +++   NW++ W+
Sbjct: 92  NTIQ-LIWNSISNLSMHSENIRWNDIADISNWNIEWF 127


>U67952-1|AAB07577.2|  414|Caenorhabditis elegans Hypothetical
           protein F39B3.2 protein.
          Length = 414

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/47 (27%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
 Frame = -3

Query: 642 SSSYVLFVTSSALPFVRFL---LSTILTVFFPFSSPLRSIIDATVFL 511
           S++++ F+   AL F++ L   L+   T FF F+  + +++  ++FL
Sbjct: 10  STTFIAFIFDWALYFIQMLSHLLNGYFTAFFVFTGIILNLLSVSIFL 56


>AC024776-11|AAK68461.1|  349|Caenorhabditis elegans Hypothetical
           protein Y41D4B.11 protein.
          Length = 349

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 19/82 (23%), Positives = 42/82 (51%)
 Frame = +2

Query: 425 KVLKECEIWAKSQAKIPKQMRTFEDSQKSKKTVASMIERKGDEKGKKTVKIVESKNLTNG 604
           K++++ E   K Q K   + +  ++++K ++  A  +E    EK K+  K  E + +   
Sbjct: 134 KIIEDAEKRKKEQEKREIENK-IKEARKKREQEARRLEEV--EKLKEQKK-AEKRKMKEA 189

Query: 605 KAEEVTNNTYDDDVIAANRAKL 670
             +E    ++D+D ++  RAK+
Sbjct: 190 LEKEEEEESFDEDEVSEKRAKI 211


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,582,960
Number of Sequences: 27780
Number of extensions: 316555
Number of successful extensions: 1155
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1152
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)