Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6331
         (716 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   3.8  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    21   8.8  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   8.8  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   8.8  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   8.8  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = +2

Query: 311 SYVDKFLNDVHLEFRDKYKNELQTGPCIV 397
           +Y+DK   D++LE   + K+      C++
Sbjct: 459 NYIDKETKDMNLEISTRPKSNTVENACVL 487


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -3

Query: 621 VTSSALPFVRFLLSTILTVFFPFSSPLR-SIIDATVFLDFWE 499
           +T   L F  F++STIL  F     P+R SI D  +  D  E
Sbjct: 388 LTVVCLAFWSFIVSTILLWFINKIIPIRMSIHDELLGADLVE 429


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 471 ILACDFAHISHSFSTLSKVVLKLKSTI 391
           IL C+   +S  FS L   +L L ST+
Sbjct: 664 ILKCNIQDMSFLFSQLYNALLILISTV 690


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 261 MSLNWFL*LHTNAYSSYHMWI 323
           MS+N     +TN Y  Y++W+
Sbjct: 132 MSINNTNNNNTNKYKDYYIWV 152


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 471 ILACDFAHISHSFSTLSKVVLKLKSTI 391
           IL C+   +S  FS L   +L L ST+
Sbjct: 754 ILKCNIQDMSFLFSQLYNALLILISTV 780


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,266
Number of Sequences: 438
Number of extensions: 4517
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)