Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-6326
(793 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81042-2|CAB02793.1| 458|Caenorhabditis elegans Hypothetical pr... 244 6e-65
AF039052-8|AAF98631.1| 448|Caenorhabditis elegans Ruvb (recombi... 154 8e-38
AL117203-4|CAB55106.2| 813|Caenorhabditis elegans Hypothetical ... 45 7e-05
AF059715-1|AAF05624.1| 813|Caenorhabditis elegans cell survival... 44 9e-05
AC024756-9|AAK29883.4| 430|Caenorhabditis elegans Related to ye... 43 3e-04
Z49886-1|CAA90050.1| 809|Caenorhabditis elegans Hypothetical pr... 41 0.001
Z49128-5|CAA88955.1| 676|Caenorhabditis elegans Hypothetical pr... 41 0.001
Z75713-7|CAD56596.1| 475|Caenorhabditis elegans Hypothetical pr... 40 0.002
Z75713-6|CAB00052.1| 472|Caenorhabditis elegans Hypothetical pr... 40 0.002
L25423-1|AAA28109.1| 472|Caenorhabditis elegans mei-1 protein. 40 0.002
AC025715-1|ABJ99062.1| 747|Caenorhabditis elegans Paraplegin aa... 40 0.002
AB257343-1|BAE96353.1| 747|Caenorhabditis elegans paraplegin pr... 40 0.002
Z48334-9|CAA88314.1| 810|Caenorhabditis elegans Hypothetical pr... 39 0.004
Z48045-12|CAA88105.1| 810|Caenorhabditis elegans Hypothetical p... 39 0.004
AF016424-2|AAB65332.1| 720|Caenorhabditis elegans Peroxisome as... 39 0.004
AB012224-1|BAA76440.1| 720|Caenorhabditis elegans Pex6p homolog... 39 0.004
AB010968-1|BAA33544.1| 720|Caenorhabditis elegans PEX6 protein. 39 0.004
U53149-2|AAM29664.1| 451|Caenorhabditis elegans Hypothetical pr... 39 0.005
Z98866-1|CAB11558.1| 416|Caenorhabditis elegans Hypothetical pr... 38 0.006
AF043693-4|AAB97538.1| 971|Caenorhabditis elegans Hypothetical ... 38 0.008
AF099922-3|AAK21407.2| 411|Caenorhabditis elegans Hypothetical ... 38 0.011
AF099922-2|AAM48537.1| 432|Caenorhabditis elegans Hypothetical ... 38 0.011
AC024791-6|AAF60660.2| 782|Caenorhabditis elegans Human spg (sp... 38 0.011
AL033514-5|CAA22082.1| 773|Caenorhabditis elegans Hypothetical ... 37 0.014
Z48334-5|CAA88312.1| 424|Caenorhabditis elegans Hypothetical pr... 36 0.033
Z78012-4|CAB01414.1| 435|Caenorhabditis elegans Hypothetical pr... 36 0.044
Z68316-11|CAO82045.1| 1242|Caenorhabditis elegans Hypothetical p... 36 0.044
Z68316-10|CAO82044.1| 1289|Caenorhabditis elegans Hypothetical p... 36 0.044
Z68316-9|CAA92684.2| 1291|Caenorhabditis elegans Hypothetical pr... 36 0.044
Z68297-10|CAO82029.1| 1242|Caenorhabditis elegans Hypothetical p... 36 0.044
Z68297-9|CAO82028.1| 1289|Caenorhabditis elegans Hypothetical pr... 36 0.044
Z68297-8|CAA92596.2| 1291|Caenorhabditis elegans Hypothetical pr... 36 0.044
DQ140399-1|AAZ73761.1| 1291|Caenorhabditis elegans lin-48 expres... 36 0.044
U12965-4|AAA20608.1| 414|Caenorhabditis elegans Proteasome regu... 35 0.058
AF024493-9|AAV58871.1| 398|Caenorhabditis elegans Proteasome re... 35 0.058
AF024493-8|AAB70326.2| 406|Caenorhabditis elegans Proteasome re... 35 0.058
AF067618-3|AAC19196.1| 430|Caenorhabditis elegans Proteasome re... 35 0.077
Z96100-7|CAB09531.1| 824|Caenorhabditis elegans Hypothetical pr... 34 0.10
Z79698-2|CAB01976.1| 824|Caenorhabditis elegans Hypothetical pr... 34 0.10
Z79698-1|CAL44963.1| 758|Caenorhabditis elegans Hypothetical pr... 34 0.10
Z70265-1|CAA94202.1| 1283|Caenorhabditis elegans Hypothetical pr... 34 0.10
L23648-10|AAK95878.2| 368|Caenorhabditis elegans Hypothetical p... 34 0.10
AL031633-9|CAA21023.1| 636|Caenorhabditis elegans Hypothetical ... 34 0.10
AF016440-3|AAB65906.1| 443|Caenorhabditis elegans Proteasome re... 34 0.10
AF016427-1|AAB65351.1| 594|Caenorhabditis elegans Hypothetical ... 34 0.10
Z69664-3|CAC42312.1| 339|Caenorhabditis elegans Hypothetical pr... 34 0.13
Z69664-2|CAA93516.2| 342|Caenorhabditis elegans Hypothetical pr... 34 0.13
U80437-18|AAB37629.1| 518|Caenorhabditis elegans Cell division ... 33 0.18
U40935-3|AAA81689.1| 334|Caenorhabditis elegans Rfc (dna replic... 33 0.18
Z48583-2|CAA88471.2| 595|Caenorhabditis elegans Hypothetical pr... 33 0.31
Z73906-3|CAE45047.1| 470|Caenorhabditis elegans Hypothetical pr... 32 0.41
Z73906-2|CAA98115.1| 586|Caenorhabditis elegans Hypothetical pr... 32 0.41
AL132853-9|CAB60444.4| 1467|Caenorhabditis elegans Hypothetical ... 32 0.54
Z68879-1|CAA93081.1| 850|Caenorhabditis elegans Hypothetical pr... 31 0.71
U88170-1|AAB42248.2| 438|Caenorhabditis elegans Hypothetical pr... 31 0.71
AF036699-3|AAB88360.1| 334|Caenorhabditis elegans Rfc (dna repl... 31 0.71
Z75532-2|CAA99812.1| 839|Caenorhabditis elegans Hypothetical pr... 31 1.2
U29535-1|AAK31459.1| 200|Caenorhabditis elegans Hypothetical pr... 31 1.2
Z49967-12|CAI70401.1| 396|Caenorhabditis elegans Hypothetical p... 30 1.7
Z49967-11|CAA90252.1| 442|Caenorhabditis elegans Hypothetical p... 30 1.7
Z70268-6|CAA94221.2| 1243|Caenorhabditis elegans Hypothetical pr... 30 2.2
Z70265-4|CAA94203.2| 1243|Caenorhabditis elegans Hypothetical pr... 30 2.2
AF074017-1|AAC26789.1| 1069|Caenorhabditis elegans nonsense-medi... 30 2.2
AC025721-8|AAK29903.2| 1069|Caenorhabditis elegans Suppressor wi... 30 2.2
Z68113-4|CAA92148.2| 1503|Caenorhabditis elegans Hypothetical pr... 29 5.0
Z47075-3|CAA87383.2| 182|Caenorhabditis elegans Hypothetical pr... 29 5.0
AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical ... 29 5.0
Z70038-1|CAA93884.1| 2219|Caenorhabditis elegans Hypothetical pr... 28 6.7
U88169-7|ABQ13064.1| 205|Caenorhabditis elegans Hypothetical pr... 28 6.7
U88169-6|AAB42236.2| 216|Caenorhabditis elegans Hypothetical pr... 28 6.7
AF040659-1|AAK39389.1| 332|Caenorhabditis elegans Hypothetical ... 28 6.7
>Z81042-2|CAB02793.1| 458|Caenorhabditis elegans Hypothetical
protein C27H6.2 protein.
Length = 458
Score = 244 bits (597), Expect = 6e-65
Identities = 123/184 (66%), Positives = 151/184 (82%), Gaps = 2/184 (1%)
Frame = +3
Query: 78 IEEVKSTAKT-QRISAHSHIKGLGLD-ENGVPIQMAAGLVGQESAREAAGIVVDMIRSKK 251
IEEVK T K +RI+AHSH+KGLG+D E AAG VGQ AR AA IVVDMIR K
Sbjct: 20 IEEVKPTPKQIKRIAAHSHVKGLGIDTETQEAHYEAAGFVGQAPARTAASIVVDMIRLKC 79
Query: 252 MAGRALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLMENFRRAI 431
MAGRA+L+AGPP TGKTAIALA++QELG VPF P+V SEV+S E+KKTEVLM +FRRAI
Sbjct: 80 MAGRAVLIAGPPATGKTAIALAMSQELGDGVPFVPLVASEVFSNEVKKTEVLMRSFRRAI 139
Query: 432 GLRIRETKEVYEGEVTELTPVETENPAGGYGKTVSHVIIGLKTAKGTKQLKLDPTIYESL 611
GLR++ETK+VYEGEVTEL+PVE + + G GKT+SH+++ LKTAKG+KQLKLDP+IY+S+
Sbjct: 140 GLRVKETKDVYEGEVTELSPVEASDNS-GMGKTISHLVLSLKTAKGSKQLKLDPSIYDSI 198
Query: 612 QKEK 623
K++
Sbjct: 199 LKQR 202
Score = 84.6 bits (200), Expect = 7e-17
Identities = 37/56 (66%), Positives = 49/56 (87%)
Frame = +2
Query: 626 LKLGDVIYIEAXSGAVKRQGRSDSFATEFDLEAEEYVPLPKGDVHKKKEVVQDVTL 793
+++GDVIYIEA SG VKR GR D +A+EFDLEA+E+VP+PKGDV K K++VQ+V+L
Sbjct: 203 VEVGDVIYIEANSGIVKRVGRCDVYASEFDLEADEFVPMPKGDVRKSKDIVQNVSL 258
>AF039052-8|AAF98631.1| 448|Caenorhabditis elegans Ruvb
(recombination protein) homologprotein 2 protein.
Length = 448
Score = 154 bits (373), Expect = 8e-38
Identities = 78/149 (52%), Positives = 102/149 (68%)
Frame = +3
Query: 87 VKSTAKTQRISAHSHIKGLGLDENGVPIQMAAGLVGQESAREAAGIVVDMIRSKKMAGRA 266
VK K +R S HSHI GLGL++ ++ G+VGQ +AR+AAG++V MI+ K+AGRA
Sbjct: 9 VKDIVKVERTSVHSHITGLGLNDRLEAEYVSGGMVGQVAARQAAGLIVKMIQEGKIAGRA 68
Query: 267 LLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLMENFRRAIGLRIR 446
LL+ G PG GKTAIA+AI++ELG PF +V SE+YS EI KTE L + FRRA+G++I+
Sbjct: 69 LLVTGEPGAGKTAIAIAISKELGEDTPFVSIVASEIYSNEINKTEALTQAFRRALGIQIK 128
Query: 447 ETKEVYEGEVTELTPVETENPAGGYGKTV 533
E EV EGEV L E + A G G V
Sbjct: 129 EETEVLEGEVISL---EVDRSANGMGPKV 154
Score = 37.5 bits (83), Expect = 0.011
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Frame = +2
Query: 635 GDVIYIEAXSGAVKRQGRSDSFATEFDLEAE--EYVPLPKGDVHKKKEVVQDVTL 793
GDVI ++ SG V R GRS + + ++D + V P G++ K++E V V L
Sbjct: 186 GDVIQVDKASGRVTRLGRSFNRSHDYDAMGPKVKLVQCPDGEIQKRRETVHTVCL 240
>AL117203-4|CAB55106.2| 813|Caenorhabditis elegans Hypothetical
protein Y48C3A.7 protein.
Length = 813
Score = 44.8 bits (101), Expect = 7e-05
Identities = 29/110 (26%), Positives = 57/110 (51%), Gaps = 1/110 (0%)
Frame = +3
Query: 261 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLMEN-FRRAIGL 437
+ +LL GPPG GKT +A A+A E G + F + G E+ + + ++E + F+RA
Sbjct: 569 QGILLCGPPGCGKTLLAKAVANETG--MNFISVKGPELLNMYVGESERAVRTVFQRA--- 623
Query: 438 RIRETKEVYEGEVTELTPVETENPAGGYGKTVSHVIIGLKTAKGTKQLKL 587
R + ++ E+ L P + + G + V+ ++ + +G +++ L
Sbjct: 624 RDSQPCVIFFDEIDALVPKRSHGESSGGARLVNQLLTEMDGVEGRQKVFL 673
Score = 34.7 bits (76), Expect = 0.077
Identities = 18/47 (38%), Positives = 26/47 (55%)
Frame = +3
Query: 261 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTE 401
R ++ GPPG GKT A A+A EL +P + +E+ S +TE
Sbjct: 240 RGFIVHGPPGCGKTMFAQAVAGELA--IPMLQLAATELVSGVSGETE 284
>AF059715-1|AAF05624.1| 813|Caenorhabditis elegans cell survival
CED-4-interactingprotein MAC-1 protein.
Length = 813
Score = 44.4 bits (100), Expect = 9e-05
Identities = 29/110 (26%), Positives = 57/110 (51%), Gaps = 1/110 (0%)
Frame = +3
Query: 261 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLMEN-FRRAIGL 437
+ +LL GPPG GKT +A A+A E G + F + G E+ + + ++E + F+RA
Sbjct: 569 QGILLCGPPGCGKTLLAKAVANETG--MNFFSVKGPELLNMYVGESERAVRTVFQRA--- 623
Query: 438 RIRETKEVYEGEVTELTPVETENPAGGYGKTVSHVIIGLKTAKGTKQLKL 587
R + ++ E+ L P + + G + V+ ++ + +G +++ L
Sbjct: 624 RDSQPCVIFFDEIDALVPKRSHGESSGGARLVNQLLTEMDGVEGRQKVFL 673
Score = 34.7 bits (76), Expect = 0.077
Identities = 18/47 (38%), Positives = 26/47 (55%)
Frame = +3
Query: 261 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTE 401
R ++ GPPG GKT A A+A EL +P + +E+ S +TE
Sbjct: 240 RGFIVHGPPGCGKTMFAQAVAGELA--IPMLQLAATELVSGVSGETE 284
>AC024756-9|AAK29883.4| 430|Caenorhabditis elegans Related to yeast
vacuolar proteinsorting factor protein 4 protein.
Length = 430
Score = 42.7 bits (96), Expect = 3e-04
Identities = 28/83 (33%), Positives = 47/83 (56%), Gaps = 4/83 (4%)
Frame = +3
Query: 180 AGLVG-QESAREAAGIVV---DMIRSKKMAGRALLLAGPPGTGKTAIALAIAQELGTKVP 347
AGL G +E+ +EA + + + + + +LL GPPGTGK+ IA A+A E G
Sbjct: 121 AGLEGAKEALKEAVILPIKFPQLFTGNRKPWQGILLFGPPGTGKSYIAKAVATEAGEST- 179
Query: 348 FCPMVGSEVYSTEIKKTEVLMEN 416
F + S++ S + ++E L++N
Sbjct: 180 FFSISSSDLMSKWLGESEKLVKN 202
>Z49886-1|CAA90050.1| 809|Caenorhabditis elegans Hypothetical
protein C06A1.1 protein.
Length = 809
Score = 40.7 bits (91), Expect = 0.001
Identities = 33/108 (30%), Positives = 50/108 (46%), Gaps = 1/108 (0%)
Frame = +3
Query: 261 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLMENFRRAI-GL 437
R +LL GPPGTGKT IA A+A E G+ F + G EV S ++E N R+A
Sbjct: 245 RGILLFGPPGTGKTLIARAVANETGSF--FFLINGPEVMSKMSGESE---SNLRKAFEEC 299
Query: 438 RIRETKEVYEGEVTELTPVETENPAGGYGKTVSHVIIGLKTAKGTKQL 581
+ ++ E+ + P + + VS ++ + KG L
Sbjct: 300 EKNQPAILFIDEIDAIAPKREKTNGEVERRIVSQLLTLMDGVKGRSNL 347
Score = 31.9 bits (69), Expect = 0.54
Identities = 14/23 (60%), Positives = 16/23 (69%)
Frame = +3
Query: 261 RALLLAGPPGTGKTAIALAIAQE 329
R +L GPPG GKT +A AIA E
Sbjct: 518 RGVLFYGPPGCGKTLLAKAIANE 540
>Z49128-5|CAA88955.1| 676|Caenorhabditis elegans Hypothetical
protein M03C11.5 protein.
Length = 676
Score = 40.7 bits (91), Expect = 0.001
Identities = 21/37 (56%), Positives = 25/37 (67%)
Frame = +3
Query: 261 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSE 371
+ +LL GPPGTGKT +A AIA E +VPF GSE
Sbjct: 235 KGVLLVGPPGTGKTLLARAIAGE--AQVPFFHTAGSE 269
>Z75713-7|CAD56596.1| 475|Caenorhabditis elegans Hypothetical
protein T01G9.5b protein.
Length = 475
Score = 39.9 bits (89), Expect = 0.002
Identities = 18/36 (50%), Positives = 25/36 (69%)
Frame = +3
Query: 222 IVVDMIRSKKMAGRALLLAGPPGTGKTAIALAIAQE 329
+V + + + +A++LAGPPGTGKT IA AIA E
Sbjct: 214 LVPEFFQGLRSPWKAMVLAGPPGTGKTLIARAIASE 249
>Z75713-6|CAB00052.1| 472|Caenorhabditis elegans Hypothetical
protein T01G9.5a protein.
Length = 472
Score = 39.9 bits (89), Expect = 0.002
Identities = 18/36 (50%), Positives = 25/36 (69%)
Frame = +3
Query: 222 IVVDMIRSKKMAGRALLLAGPPGTGKTAIALAIAQE 329
+V + + + +A++LAGPPGTGKT IA AIA E
Sbjct: 214 LVPEFFQGLRSPWKAMVLAGPPGTGKTLIARAIASE 249
>L25423-1|AAA28109.1| 472|Caenorhabditis elegans mei-1 protein.
Length = 472
Score = 39.9 bits (89), Expect = 0.002
Identities = 18/36 (50%), Positives = 25/36 (69%)
Frame = +3
Query: 222 IVVDMIRSKKMAGRALLLAGPPGTGKTAIALAIAQE 329
+V + + + +A++LAGPPGTGKT IA AIA E
Sbjct: 214 LVPEFFQGLRSPWKAMVLAGPPGTGKTLIARAIASE 249
>AC025715-1|ABJ99062.1| 747|Caenorhabditis elegans Paraplegin aaa
protease familyprotein 1 protein.
Length = 747
Score = 39.9 bits (89), Expect = 0.002
Identities = 21/37 (56%), Positives = 24/37 (64%)
Frame = +3
Query: 261 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSE 371
R LL GPPG GKT +A A+A E + VPF M GSE
Sbjct: 319 RGALLTGPPGCGKTLLAKALAAE--STVPFISMNGSE 353
>AB257343-1|BAE96353.1| 747|Caenorhabditis elegans paraplegin
protein.
Length = 747
Score = 39.9 bits (89), Expect = 0.002
Identities = 21/37 (56%), Positives = 24/37 (64%)
Frame = +3
Query: 261 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSE 371
R LL GPPG GKT +A A+A E + VPF M GSE
Sbjct: 319 RGALLTGPPGCGKTLLAKALAAE--STVPFISMNGSE 353
>Z48334-9|CAA88314.1| 810|Caenorhabditis elegans Hypothetical
protein C41C4.8 protein.
Length = 810
Score = 39.1 bits (87), Expect = 0.004
Identities = 25/56 (44%), Positives = 32/56 (57%)
Frame = +3
Query: 261 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLMENFRRA 428
R +LL GPPGTGKT IA A+A E G F + G E+ S ++E N R+A
Sbjct: 244 RGILLFGPPGTGKTLIARAVANETGAF--FFLINGPEIMSKMSGESE---SNLRKA 294
Score = 31.9 bits (69), Expect = 0.54
Identities = 14/23 (60%), Positives = 16/23 (69%)
Frame = +3
Query: 261 RALLLAGPPGTGKTAIALAIAQE 329
R +L GPPG GKT +A AIA E
Sbjct: 517 RGVLFYGPPGCGKTLLAKAIANE 539
>Z48045-12|CAA88105.1| 810|Caenorhabditis elegans Hypothetical
protein C41C4.8 protein.
Length = 810
Score = 39.1 bits (87), Expect = 0.004
Identities = 25/56 (44%), Positives = 32/56 (57%)
Frame = +3
Query: 261 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLMENFRRA 428
R +LL GPPGTGKT IA A+A E G F + G E+ S ++E N R+A
Sbjct: 244 RGILLFGPPGTGKTLIARAVANETGAF--FFLINGPEIMSKMSGESE---SNLRKA 294
Score = 31.9 bits (69), Expect = 0.54
Identities = 14/23 (60%), Positives = 16/23 (69%)
Frame = +3
Query: 261 RALLLAGPPGTGKTAIALAIAQE 329
R +L GPPG GKT +A AIA E
Sbjct: 517 RGVLFYGPPGCGKTLLAKAIANE 539
>AF016424-2|AAB65332.1| 720|Caenorhabditis elegans Peroxisome
assembly factor protein6 protein.
Length = 720
Score = 39.1 bits (87), Expect = 0.004
Identities = 34/119 (28%), Positives = 55/119 (46%), Gaps = 7/119 (5%)
Frame = +3
Query: 210 EAAGIVVDMIRSKKMAGRAL-----LLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEV 374
E V++ IR+ RAL +L G PG GKT IA A+A E K+ F + G E+
Sbjct: 472 ETKQTVLESIRTNLFGSRALKRSGIILYGSPGCGKTLIAKAVATEF--KIAFLSVKGPEL 529
Query: 375 YSTEIKKTEVLMENFRRAIGLRIRETKE--VYEGEVTELTPVETENPAGGYGKTVSHVI 545
+ + ++E EN R+ R ++ ++ E+ L P N G G + ++
Sbjct: 530 LNKYVGQSE---ENLRKVFE-RAKQASPCVIFFDEIDSLAPNRGRN--GDSGGVIDRIV 582
>AB012224-1|BAA76440.1| 720|Caenorhabditis elegans Pex6p homolog
protein.
Length = 720
Score = 39.1 bits (87), Expect = 0.004
Identities = 34/119 (28%), Positives = 55/119 (46%), Gaps = 7/119 (5%)
Frame = +3
Query: 210 EAAGIVVDMIRSKKMAGRAL-----LLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEV 374
E V++ IR+ RAL +L G PG GKT IA A+A E K+ F + G E+
Sbjct: 472 ETKQTVLESIRTNLFGSRALKRSGIILYGSPGCGKTLIAKAVATEF--KIAFLSVKGPEL 529
Query: 375 YSTEIKKTEVLMENFRRAIGLRIRETKE--VYEGEVTELTPVETENPAGGYGKTVSHVI 545
+ + ++E EN R+ R ++ ++ E+ L P N G G + ++
Sbjct: 530 LNKYVGQSE---ENLRKVFE-RAKQASPCVIFFDEIDSLAPNRGRN--GDSGGVIDRIV 582
>AB010968-1|BAA33544.1| 720|Caenorhabditis elegans PEX6 protein.
Length = 720
Score = 39.1 bits (87), Expect = 0.004
Identities = 34/119 (28%), Positives = 55/119 (46%), Gaps = 7/119 (5%)
Frame = +3
Query: 210 EAAGIVVDMIRSKKMAGRAL-----LLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEV 374
E V++ IR+ RAL +L G PG GKT IA A+A E K+ F + G E+
Sbjct: 472 ETKQTVLESIRTNLFGSRALKRSGIILYGSPGCGKTLIAKAVATEF--KIAFLSVKGPEL 529
Query: 375 YSTEIKKTEVLMENFRRAIGLRIRETKE--VYEGEVTELTPVETENPAGGYGKTVSHVI 545
+ + ++E EN R+ R ++ ++ E+ L P N G G + ++
Sbjct: 530 LNKYVGQSE---ENLRKVFE-RAKQASPCVIFFDEIDSLAPNRGRN--GDSGGVIDRIV 582
>U53149-2|AAM29664.1| 451|Caenorhabditis elegans Hypothetical
protein C24B5.2a protein.
Length = 451
Score = 38.7 bits (86), Expect = 0.005
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Frame = +3
Query: 147 LDENGVPIQMAAGLVGQESAREAAGIVV----DMIRSKKMAGRALLLAGPPGTGKTAIAL 314
LD GV + AG ++A E A I+ ++ + + + +LL GPPG GKT +A
Sbjct: 170 LDNTGVRMDDVAGCHSAKAALEEAVILPALNPNLFKGLRQPVKGILLFGPPGNGKTLLAK 229
Query: 315 AIAQE 329
A+A E
Sbjct: 230 AVAGE 234
>Z98866-1|CAB11558.1| 416|Caenorhabditis elegans Hypothetical
protein Y49E10.1 protein.
Length = 416
Score = 38.3 bits (85), Expect = 0.006
Identities = 32/113 (28%), Positives = 54/113 (47%), Gaps = 4/113 (3%)
Frame = +3
Query: 261 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEI-KKTEVLMENFRRAIGL 437
+ +LL GPPGTGKT +A A+A T+ F + GSE+ I + ++ E F A
Sbjct: 194 KGVLLFGPPGTGKTLLARAVAHH--TECTFIRVSGSELVQKFIGEGARMVRELFVMA--- 248
Query: 438 RIRETKEVYEGEVTELTPVETENPAGG---YGKTVSHVIIGLKTAKGTKQLKL 587
R ++ E+ + E +GG +T+ ++ L + TK +K+
Sbjct: 249 REHAPSIIFMDEIDSIGSSRVEGSSGGDSEVQRTMLELLNQLDGFEATKNIKV 301
>AF043693-4|AAB97538.1| 971|Caenorhabditis elegans Hypothetical
protein C34B2.6 protein.
Length = 971
Score = 37.9 bits (84), Expect = 0.008
Identities = 24/57 (42%), Positives = 32/57 (56%)
Frame = +3
Query: 222 IVVDMIRSKKMAGRALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIK 392
I V+++R K + G+ L GPPG GKT+IA +IA L + F VG EIK
Sbjct: 494 IAVNLLR-KSIGGKILCFHGPPGVGKTSIAKSIATALNREY-FRFSVGGMTDVAEIK 548
>AF099922-3|AAK21407.2| 411|Caenorhabditis elegans Hypothetical
protein F56F11.4a protein.
Length = 411
Score = 37.5 bits (83), Expect = 0.011
Identities = 32/113 (28%), Positives = 53/113 (46%), Gaps = 4/113 (3%)
Frame = +3
Query: 261 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEI-KKTEVLMENFRRAIGL 437
+ +LL GPPGTGKT +A A+A T+ F + GSE+ I + ++ E F A
Sbjct: 189 KGVLLYGPPGTGKTLLARAVAHH--TECTFIRVSGSELVQKFIGEGARMVRELFVMA--- 243
Query: 438 RIRETKEVYEGEVTELTPVETENPAGG---YGKTVSHVIIGLKTAKGTKQLKL 587
R ++ E+ + E GG +T+ ++ L + TK +K+
Sbjct: 244 REHAPSIIFMDEIDSIGSSRVEGSRGGDSEVQRTMLELLNQLDGFEATKNIKV 296
>AF099922-2|AAM48537.1| 432|Caenorhabditis elegans Hypothetical
protein F56F11.4b protein.
Length = 432
Score = 37.5 bits (83), Expect = 0.011
Identities = 32/113 (28%), Positives = 53/113 (46%), Gaps = 4/113 (3%)
Frame = +3
Query: 261 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEI-KKTEVLMENFRRAIGL 437
+ +LL GPPGTGKT +A A+A T+ F + GSE+ I + ++ E F A
Sbjct: 210 KGVLLYGPPGTGKTLLARAVAHH--TECTFIRVSGSELVQKFIGEGARMVRELFVMA--- 264
Query: 438 RIRETKEVYEGEVTELTPVETENPAGG---YGKTVSHVIIGLKTAKGTKQLKL 587
R ++ E+ + E GG +T+ ++ L + TK +K+
Sbjct: 265 REHAPSIIFMDEIDSIGSSRVEGSRGGDSEVQRTMLELLNQLDGFEATKNIKV 317
>AC024791-6|AAF60660.2| 782|Caenorhabditis elegans Human spg
(spastic paraplegia)protein 7 protein.
Length = 782
Score = 37.5 bits (83), Expect = 0.011
Identities = 19/37 (51%), Positives = 23/37 (62%)
Frame = +3
Query: 261 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSE 371
+ +L GPPGTGKT +A A A E VPF + GSE
Sbjct: 327 KGAILTGPPGTGKTLLAKATAGE--ANVPFITVSGSE 361
>AL033514-5|CAA22082.1| 773|Caenorhabditis elegans Hypothetical
protein Y75B8A.4 protein.
Length = 773
Score = 37.1 bits (82), Expect = 0.014
Identities = 16/33 (48%), Positives = 21/33 (63%)
Frame = +3
Query: 243 SKKMAGRALLLAGPPGTGKTAIALAIAQELGTK 341
+ + G L GPPG GKT+IA AIA+ +G K
Sbjct: 324 NNSVKGMILCFTGPPGIGKTSIAKAIAESMGRK 356
>Z48334-5|CAA88312.1| 424|Caenorhabditis elegans Hypothetical
protein F10B5.5 protein.
Length = 424
Score = 35.9 bits (79), Expect = 0.033
Identities = 14/28 (50%), Positives = 20/28 (71%)
Frame = +3
Query: 261 RALLLAGPPGTGKTAIALAIAQELGTKV 344
R +LL GPPGTGKT++ +AQ L ++
Sbjct: 173 RLILLTGPPGTGKTSLCKGLAQHLSIRM 200
>Z78012-4|CAB01414.1| 435|Caenorhabditis elegans Hypothetical
protein C52E4.4 protein.
Length = 435
Score = 35.5 bits (78), Expect = 0.044
Identities = 18/38 (47%), Positives = 24/38 (63%)
Frame = +3
Query: 261 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEV 374
+ +LL GPPGTGKT A A+A T F ++GSE+
Sbjct: 212 KGVLLYGPPGTGKTLCARAVANR--TDACFIRVIGSEL 247
>Z68316-11|CAO82045.1| 1242|Caenorhabditis elegans Hypothetical
protein F11A10.1c protein.
Length = 1242
Score = 35.5 bits (78), Expect = 0.044
Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 4/99 (4%)
Frame = +3
Query: 261 RALLLAGPPGTGKTAIALAIAQEL---GTKVPFCPMVGSEVYSTEIKKTE-VLMENFRRA 428
+ ++ GPPGTGKT +A A+A E KV F G++ S + ++E L F +A
Sbjct: 426 KGVVFYGPPGTGKTLVARALANECRRGANKVAFFMRKGADCLSKWVGESERQLRLLFDQA 485
Query: 429 IGLRIRETKEVYEGEVTELTPVETENPAGGYGKTVSHVI 545
+R ++ E+ L PV + + VS ++
Sbjct: 486 YAMR---PSIIFFDEIDGLAPVRSSKQDQIHASIVSTLL 521
>Z68316-10|CAO82044.1| 1289|Caenorhabditis elegans Hypothetical
protein F11A10.1b protein.
Length = 1289
Score = 35.5 bits (78), Expect = 0.044
Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 4/99 (4%)
Frame = +3
Query: 261 RALLLAGPPGTGKTAIALAIAQEL---GTKVPFCPMVGSEVYSTEIKKTE-VLMENFRRA 428
+ ++ GPPGTGKT +A A+A E KV F G++ S + ++E L F +A
Sbjct: 424 KGVVFYGPPGTGKTLVARALANECRRGANKVAFFMRKGADCLSKWVGESERQLRLLFDQA 483
Query: 429 IGLRIRETKEVYEGEVTELTPVETENPAGGYGKTVSHVI 545
+R ++ E+ L PV + + VS ++
Sbjct: 484 YAMR---PSIIFFDEIDGLAPVRSSKQDQIHASIVSTLL 519
>Z68316-9|CAA92684.2| 1291|Caenorhabditis elegans Hypothetical
protein F11A10.1a protein.
Length = 1291
Score = 35.5 bits (78), Expect = 0.044
Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 4/99 (4%)
Frame = +3
Query: 261 RALLLAGPPGTGKTAIALAIAQEL---GTKVPFCPMVGSEVYSTEIKKTE-VLMENFRRA 428
+ ++ GPPGTGKT +A A+A E KV F G++ S + ++E L F +A
Sbjct: 426 KGVVFYGPPGTGKTLVARALANECRRGANKVAFFMRKGADCLSKWVGESERQLRLLFDQA 485
Query: 429 IGLRIRETKEVYEGEVTELTPVETENPAGGYGKTVSHVI 545
+R ++ E+ L PV + + VS ++
Sbjct: 486 YAMR---PSIIFFDEIDGLAPVRSSKQDQIHASIVSTLL 521
>Z68297-10|CAO82029.1| 1242|Caenorhabditis elegans Hypothetical
protein F11A10.1c protein.
Length = 1242
Score = 35.5 bits (78), Expect = 0.044
Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 4/99 (4%)
Frame = +3
Query: 261 RALLLAGPPGTGKTAIALAIAQEL---GTKVPFCPMVGSEVYSTEIKKTE-VLMENFRRA 428
+ ++ GPPGTGKT +A A+A E KV F G++ S + ++E L F +A
Sbjct: 426 KGVVFYGPPGTGKTLVARALANECRRGANKVAFFMRKGADCLSKWVGESERQLRLLFDQA 485
Query: 429 IGLRIRETKEVYEGEVTELTPVETENPAGGYGKTVSHVI 545
+R ++ E+ L PV + + VS ++
Sbjct: 486 YAMR---PSIIFFDEIDGLAPVRSSKQDQIHASIVSTLL 521
>Z68297-9|CAO82028.1| 1289|Caenorhabditis elegans Hypothetical
protein F11A10.1b protein.
Length = 1289
Score = 35.5 bits (78), Expect = 0.044
Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 4/99 (4%)
Frame = +3
Query: 261 RALLLAGPPGTGKTAIALAIAQEL---GTKVPFCPMVGSEVYSTEIKKTE-VLMENFRRA 428
+ ++ GPPGTGKT +A A+A E KV F G++ S + ++E L F +A
Sbjct: 424 KGVVFYGPPGTGKTLVARALANECRRGANKVAFFMRKGADCLSKWVGESERQLRLLFDQA 483
Query: 429 IGLRIRETKEVYEGEVTELTPVETENPAGGYGKTVSHVI 545
+R ++ E+ L PV + + VS ++
Sbjct: 484 YAMR---PSIIFFDEIDGLAPVRSSKQDQIHASIVSTLL 519
>Z68297-8|CAA92596.2| 1291|Caenorhabditis elegans Hypothetical
protein F11A10.1a protein.
Length = 1291
Score = 35.5 bits (78), Expect = 0.044
Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 4/99 (4%)
Frame = +3
Query: 261 RALLLAGPPGTGKTAIALAIAQEL---GTKVPFCPMVGSEVYSTEIKKTE-VLMENFRRA 428
+ ++ GPPGTGKT +A A+A E KV F G++ S + ++E L F +A
Sbjct: 426 KGVVFYGPPGTGKTLVARALANECRRGANKVAFFMRKGADCLSKWVGESERQLRLLFDQA 485
Query: 429 IGLRIRETKEVYEGEVTELTPVETENPAGGYGKTVSHVI 545
+R ++ E+ L PV + + VS ++
Sbjct: 486 YAMR---PSIIFFDEIDGLAPVRSSKQDQIHASIVSTLL 521
>DQ140399-1|AAZ73761.1| 1291|Caenorhabditis elegans lin-48
expression abnormal protein protein.
Length = 1291
Score = 35.5 bits (78), Expect = 0.044
Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 4/99 (4%)
Frame = +3
Query: 261 RALLLAGPPGTGKTAIALAIAQEL---GTKVPFCPMVGSEVYSTEIKKTE-VLMENFRRA 428
+ ++ GPPGTGKT +A A+A E KV F G++ S + ++E L F +A
Sbjct: 426 KGVVFYGPPGTGKTLVARALANECRRGANKVAFFMRKGADCLSKWVGESERQLRLLFDQA 485
Query: 429 IGLRIRETKEVYEGEVTELTPVETENPAGGYGKTVSHVI 545
+R ++ E+ L PV + + VS ++
Sbjct: 486 YAMR---PSIIFFDEIDGLAPVRSSKQDQIHASIVSTLL 521
>U12965-4|AAA20608.1| 414|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 3 protein.
Length = 414
Score = 35.1 bits (77), Expect = 0.058
Identities = 18/37 (48%), Positives = 23/37 (62%)
Frame = +3
Query: 261 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSE 371
R +L+ GPPG GKT +A A+A T F +VGSE
Sbjct: 196 RGVLMYGPPGCGKTMLAKAVA--ANTAASFIRVVGSE 230
>AF024493-9|AAV58871.1| 398|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 4, isoform b
protein.
Length = 398
Score = 35.1 bits (77), Expect = 0.058
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +3
Query: 261 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEI-KKTEVLMENFRRA 428
+ LL GPPGTGKT +A A+A +L F +V S + I + ++ E F A
Sbjct: 177 KGCLLFGPPGTGKTLLARAVASQLDCN--FLKVVSSAIVDKYIGESARMIREMFNYA 231
>AF024493-8|AAB70326.2| 406|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 4, isoform a
protein.
Length = 406
Score = 35.1 bits (77), Expect = 0.058
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +3
Query: 261 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEI-KKTEVLMENFRRA 428
+ LL GPPGTGKT +A A+A +L F +V S + I + ++ E F A
Sbjct: 185 KGCLLFGPPGTGKTLLARAVASQLDCN--FLKVVSSAIVDKYIGESARMIREMFNYA 239
>AF067618-3|AAC19196.1| 430|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 5 protein.
Length = 430
Score = 34.7 bits (76), Expect = 0.077
Identities = 16/38 (42%), Positives = 25/38 (65%)
Frame = +3
Query: 261 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEV 374
+ +L+ GPPGTGKT +A A+A + TK F + G ++
Sbjct: 212 KGVLMYGPPGTGKTMMARAVAAQ--TKSTFLKLAGPQL 247
>Z96100-7|CAB09531.1| 824|Caenorhabditis elegans Hypothetical
protein H15N14.2a protein.
Length = 824
Score = 34.3 bits (75), Expect = 0.10
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +3
Query: 261 RALLLAGPPGTGKTAIALAIAQELGTKVP 347
R +LL GPPGTGKT +A I + L + P
Sbjct: 331 RGILLFGPPGTGKTLMARQIGKMLNAREP 359
>Z79698-2|CAB01976.1| 824|Caenorhabditis elegans Hypothetical
protein H15N14.2a protein.
Length = 824
Score = 34.3 bits (75), Expect = 0.10
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +3
Query: 261 RALLLAGPPGTGKTAIALAIAQELGTKVP 347
R +LL GPPGTGKT +A I + L + P
Sbjct: 331 RGILLFGPPGTGKTLMARQIGKMLNAREP 359
>Z79698-1|CAL44963.1| 758|Caenorhabditis elegans Hypothetical
protein H15N14.2b protein.
Length = 758
Score = 34.3 bits (75), Expect = 0.10
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +3
Query: 261 RALLLAGPPGTGKTAIALAIAQELGTKVP 347
R +LL GPPGTGKT +A I + L + P
Sbjct: 265 RGILLFGPPGTGKTLMARQIGKMLNAREP 293
>Z70265-1|CAA94202.1| 1283|Caenorhabditis elegans Hypothetical protein
C05A9.1 protein.
Length = 1283
Score = 34.3 bits (75), Expect = 0.10
Identities = 25/87 (28%), Positives = 41/87 (47%)
Frame = +3
Query: 189 VGQESAREAAGIVVDMIRSKKMAGRALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGS 368
V E A+ + +++D + K AGR L L GP G+GK+ I + + F V
Sbjct: 1041 VSFEYAQRSDKMILDGVSLKLPAGRTLALVGPSGSGKSTIISLLER-------FYHAVDG 1093
Query: 369 EVYSTEIKKTEVLMENFRRAIGLRIRE 449
EV E +V + + R ++ L +E
Sbjct: 1094 EVKIDEENVVDVNLHHLRESVSLVSQE 1120
>L23648-10|AAK95878.2| 368|Caenorhabditis elegans Hypothetical
protein F44B9.8 protein.
Length = 368
Score = 34.3 bits (75), Expect = 0.10
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Frame = +3
Query: 267 LLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVL---MENFRRAIGL 437
LL GPPGTGKT LA A+++ + MV E+ +++ + +V+ + NF + GL
Sbjct: 65 LLFYGPPGTGKTTTVLAAARQMYSPTKMASMV-LELNASDERGIDVVRNTIVNFAQTKGL 123
Query: 438 RIRET 452
+ T
Sbjct: 124 QAFST 128
>AL031633-9|CAA21023.1| 636|Caenorhabditis elegans Hypothetical
protein Y39A1A.12 protein.
Length = 636
Score = 34.3 bits (75), Expect = 0.10
Identities = 20/65 (30%), Positives = 31/65 (47%)
Frame = +3
Query: 204 AREAAGIVVDMIRSKKMAGRALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYST 383
+RE + ++I K+ A+ ++G PGTGKTA A+ + V EV +
Sbjct: 274 SREIEKFIREVIDPKRGESSAMYISGVPGTGKTATVRAVVNSMKKSKKCQKFVYVEVNAM 333
Query: 384 EIKKT 398
KKT
Sbjct: 334 IFKKT 338
>AF016440-3|AAB65906.1| 443|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 2 protein.
Length = 443
Score = 34.3 bits (75), Expect = 0.10
Identities = 17/38 (44%), Positives = 25/38 (65%)
Frame = +3
Query: 261 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEV 374
+ ++L G PGTGKT +A A+A + T F +VGSE+
Sbjct: 223 KGVILYGCPGTGKTLLAKAVANQ--TSATFLRIVGSEL 258
>AF016427-1|AAB65351.1| 594|Caenorhabditis elegans Hypothetical
protein F32D1.1 protein.
Length = 594
Score = 34.3 bits (75), Expect = 0.10
Identities = 38/147 (25%), Positives = 64/147 (43%), Gaps = 8/147 (5%)
Frame = +3
Query: 180 AGLVGQESAREAAGIVV-------DMIRSKKMAGRALLLAGPPGTGKTAIALAIAQELGT 338
A + G E A++A +V D+ + + +LL GPPGTGKT I +A +
Sbjct: 316 ADVAGLEGAKKALREIVVLPFKRPDVFTGIRAPPKGVLLFGPPGTGKTMIGRCVASQ--C 373
Query: 339 KVPFCPMVGSEVYSTEIKKTEVLMENFRRAIGLRIRETKEVYEGEVTELTPVETENPAGG 518
K F + S + S + + E L+ L++ + E + + E+E+ +
Sbjct: 374 KATFFNISASSLTSKWVGEGEKLVRALFSVARLKLPSVIFIDEIDSLLSSRSESEHESSR 433
Query: 519 YGKTVSHV-IIGLKTAKGTKQLKLDPT 596
KT V + G+ TA + L L T
Sbjct: 434 RIKTEFLVQLDGVNTAPDERLLVLGAT 460
>Z69664-3|CAC42312.1| 339|Caenorhabditis elegans Hypothetical
protein K04D7.2b protein.
Length = 339
Score = 33.9 bits (74), Expect = 0.13
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = +3
Query: 261 RALLLAGPPGTGKTAIALAIAQELGTK 341
R +LL GPPG GKT +A A+A+ G +
Sbjct: 115 RGILLYGPPGCGKTLLAKAVARAAGCR 141
>Z69664-2|CAA93516.2| 342|Caenorhabditis elegans Hypothetical
protein K04D7.2a protein.
Length = 342
Score = 33.9 bits (74), Expect = 0.13
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = +3
Query: 261 RALLLAGPPGTGKTAIALAIAQELGTK 341
R +LL GPPG GKT +A A+A+ G +
Sbjct: 118 RGILLYGPPGCGKTLLAKAVARAAGCR 144
>U80437-18|AAB37629.1| 518|Caenorhabditis elegans Cell division
cycle related protein6 protein.
Length = 518
Score = 33.5 bits (73), Expect = 0.18
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Frame = +3
Query: 264 ALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLMENFRRAIGLRI 443
++ ++G PGTGKTA + + + LG V C + ST K L + ++ L
Sbjct: 197 SIYVSGQPGTGKTATTMRVLKSLGKSVRSCIV---NCASTNTK--SALFKTIFESLDLDG 251
Query: 444 RETKEVYEGEVTEL-TPV 494
+ +E++E V + TP+
Sbjct: 252 KPNEEIFEKHVKQFKTPL 269
>U40935-3|AAA81689.1| 334|Caenorhabditis elegans Rfc (dna
replication factor) familyprotein 4 protein.
Length = 334
Score = 33.5 bits (73), Expect = 0.18
Identities = 15/25 (60%), Positives = 18/25 (72%)
Frame = +3
Query: 267 LLLAGPPGTGKTAIALAIAQELGTK 341
LL GPPGTGKT+ ALA ++L K
Sbjct: 51 LLFYGPPGTGKTSAALAFCRQLFPK 75
>Z48583-2|CAA88471.2| 595|Caenorhabditis elegans Hypothetical
protein F54B3.3 protein.
Length = 595
Score = 32.7 bits (71), Expect = 0.31
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = +3
Query: 207 REAAGIVVDMIRSKKMAG--RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEV 374
R I + +K+ G R ++ GPPGTGKT A ++AQ G + + + G ++
Sbjct: 323 RRLRDIAITTSNTKRNNGLFRNVMFYGPPGTGKTLFAKSLAQHSG--LDYAVLTGGDI 378
>Z73906-3|CAE45047.1| 470|Caenorhabditis elegans Hypothetical
protein D2030.2b protein.
Length = 470
Score = 32.3 bits (70), Expect = 0.41
Identities = 27/117 (23%), Positives = 51/117 (43%), Gaps = 6/117 (5%)
Frame = +3
Query: 240 RSKKMAGRALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLMENF 419
+S ++ +LL GP G GKT + +A+ L + C + E +++
Sbjct: 135 QSVRLEKSNVLLVGPSGVGKTFLTQTLARVLDVPIALCDCTSMTQAGYVGEDVESVIQKL 194
Query: 420 RRAIGLRIRETKE--VYEGEVTELTPVETENPAGGY----GKTVSHVIIGLKTAKGT 572
+A G + + ++ V+ EV ++ E + Y G+ V H + LK +GT
Sbjct: 195 VQAAGGNVEKAQQGIVFLDEVDKIAAAH-EGHSAAYRDVSGEGVQHAL--LKLVEGT 248
>Z73906-2|CAA98115.1| 586|Caenorhabditis elegans Hypothetical
protein D2030.2a protein.
Length = 586
Score = 32.3 bits (70), Expect = 0.41
Identities = 27/117 (23%), Positives = 51/117 (43%), Gaps = 6/117 (5%)
Frame = +3
Query: 240 RSKKMAGRALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLMENF 419
+S ++ +LL GP G GKT + +A+ L + C + E +++
Sbjct: 251 QSVRLEKSNVLLVGPSGVGKTFLTQTLARVLDVPIALCDCTSMTQAGYVGEDVESVIQKL 310
Query: 420 RRAIGLRIRETKE--VYEGEVTELTPVETENPAGGY----GKTVSHVIIGLKTAKGT 572
+A G + + ++ V+ EV ++ E + Y G+ V H + LK +GT
Sbjct: 311 VQAAGGNVEKAQQGIVFLDEVDKIAAAH-EGHSAAYRDVSGEGVQHAL--LKLVEGT 364
>AL132853-9|CAB60444.4| 1467|Caenorhabditis elegans Hypothetical
protein Y80D3A.2 protein.
Length = 1467
Score = 31.9 bits (69), Expect = 0.54
Identities = 29/106 (27%), Positives = 49/106 (46%)
Frame = +3
Query: 228 VDMIRSKKMAGRALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVL 407
V+ I+S G +++ GPPGTGKT +A+ I + P ++ + L
Sbjct: 811 VEAIKSGMQPGLTMVV-GPPGTGKTDVAVQIISNIYHNWP------NQRTLIVTHSNQAL 863
Query: 408 MENFRRAIGLRIRETKEVYEGEVTELTPVETENPAGGYGKTVSHVI 545
+ F + I L + E + G E +ETE YG+ V++V+
Sbjct: 864 NQLFEKIIALDVDERHLLRMGHGEE--ALETEKDFSRYGR-VNYVL 906
>Z68879-1|CAA93081.1| 850|Caenorhabditis elegans Hypothetical
protein K08F4.1 protein.
Length = 850
Score = 31.5 bits (68), Expect = 0.71
Identities = 15/55 (27%), Positives = 30/55 (54%)
Frame = +3
Query: 171 QMAAGLVGQESAREAAGIVVDMIRSKKMAGRALLLAGPPGTGKTAIALAIAQELG 335
Q L+ +E + +D + ++ + + LLL+GP G GK+ +A +A++ G
Sbjct: 301 QKVDDLLASLGEKEREVLHMDNGKIRRPSSKMLLLSGPAGLGKSTLARIVARQAG 355
>U88170-1|AAB42248.2| 438|Caenorhabditis elegans Hypothetical
protein C10G11.8 protein.
Length = 438
Score = 31.5 bits (68), Expect = 0.71
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +3
Query: 255 AGRALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEV 374
A + ++L G PGTGKT +A A+A T F GS++
Sbjct: 216 APKGVILYGEPGTGKTLLAKAVAN--STSATFIRATGSDL 253
>AF036699-3|AAB88360.1| 334|Caenorhabditis elegans Rfc (dna
replication factor) familyprotein 2 protein.
Length = 334
Score = 31.5 bits (68), Expect = 0.71
Identities = 15/27 (55%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Frame = +3
Query: 267 LLLAGPPGTGKTAIALAIAQE-LGTKV 344
++L+GPPG GKT A+A+E LG KV
Sbjct: 46 IVLSGPPGCGKTTSVWALARELLGDKV 72
>Z75532-2|CAA99812.1| 839|Caenorhabditis elegans Hypothetical
protein C54G10.2 protein.
Length = 839
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +3
Query: 261 RALLLAGPPGTGKTAIALAIAQELGTKV 344
+A LL+G PG GKT A Q+LG ++
Sbjct: 341 KAALLSGSPGVGKTTCAYMACQQLGLQL 368
>U29535-1|AAK31459.1| 200|Caenorhabditis elegans Hypothetical
protein C25H3.12 protein.
Length = 200
Score = 30.7 bits (66), Expect = 1.2
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +3
Query: 402 VLMENFRRAIGLRIRETKEVYEGEVTELTPVETENPAGGY-GKTVSHVIIGLKTAKGTKQ 578
+++EN G RI++ E G+ + ENP G+ +T++ + GL G Q
Sbjct: 2 IILENEANEPGFRIQQRAESETGKKGRFGGILKENPIKGFSSETLTRPLTGLFRKTGKSQ 61
Query: 579 LKLD 590
K D
Sbjct: 62 RKTD 65
>Z49967-12|CAI70401.1| 396|Caenorhabditis elegans Hypothetical
protein F54C9.6b protein.
Length = 396
Score = 30.3 bits (65), Expect = 1.7
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +3
Query: 261 RALLLAGPPGTGKTAIALAIAQELGTKV 344
R L GPPGTGK++ A+A G V
Sbjct: 198 RGYLFYGPPGTGKSSFISALASHFGYSV 225
>Z49967-11|CAA90252.1| 442|Caenorhabditis elegans Hypothetical
protein F54C9.6a protein.
Length = 442
Score = 30.3 bits (65), Expect = 1.7
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +3
Query: 261 RALLLAGPPGTGKTAIALAIAQELGTKV 344
R L GPPGTGK++ A+A G V
Sbjct: 244 RGYLFYGPPGTGKSSFISALASHFGYSV 271
>Z70268-6|CAA94221.2| 1243|Caenorhabditis elegans Hypothetical protein
T21E8.3 protein.
Length = 1243
Score = 29.9 bits (64), Expect = 2.2
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +3
Query: 225 VVDMIRSKKMAGRALLLAGPPGTGKTAI 308
V+D + K AG+ L + GP G+GK+ I
Sbjct: 1019 VLDSVNLKVEAGKTLAIVGPSGSGKSTI 1046
>Z70265-4|CAA94203.2| 1243|Caenorhabditis elegans Hypothetical protein
T21E8.3 protein.
Length = 1243
Score = 29.9 bits (64), Expect = 2.2
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +3
Query: 225 VVDMIRSKKMAGRALLLAGPPGTGKTAI 308
V+D + K AG+ L + GP G+GK+ I
Sbjct: 1019 VLDSVNLKVEAGKTLAIVGPSGSGKSTI 1046
>AF074017-1|AAC26789.1| 1069|Caenorhabditis elegans
nonsense-mediated mRNA decay trans-acting factor
protein.
Length = 1069
Score = 29.9 bits (64), Expect = 2.2
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +3
Query: 246 KKMAGRAL-LLAGPPGTGKTAIALAIAQELGTK 341
K++ R L L+ GPPGTGKT ++ I L K
Sbjct: 455 KQVLTRPLSLIQGPPGTGKTVVSATIVYHLVQK 487
>AC025721-8|AAK29903.2| 1069|Caenorhabditis elegans Suppressor with
morphological effecton genitalia protein 2 protein.
Length = 1069
Score = 29.9 bits (64), Expect = 2.2
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +3
Query: 246 KKMAGRAL-LLAGPPGTGKTAIALAIAQELGTK 341
K++ R L L+ GPPGTGKT ++ I L K
Sbjct: 455 KQVLTRPLSLIQGPPGTGKTVVSATIVYHLVQK 487
>Z68113-4|CAA92148.2| 1503|Caenorhabditis elegans Hypothetical protein
E03G2.2 protein.
Length = 1503
Score = 28.7 bits (61), Expect = 5.0
Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 9/94 (9%)
Frame = +3
Query: 66 FNMKIEEVKSTA-KTQRISAHSHIKGLG---LDENGVPIQM-AAGLVGQESA----REAA 218
F +I EV++ +RI +S K LD N +P G V E R+
Sbjct: 1217 FVRQINEVETNVVSVERIDEYSKTKSEAEWRLDNNNLPSNWPTGGAVNIEDYSCRYRDEL 1276
Query: 219 GIVVDMIRSKKMAGRALLLAGPPGTGKTAIALAI 320
+V+ I + G+ + + G G GK+++ALA+
Sbjct: 1277 DLVLKQISLNILPGQKVGVCGRTGAGKSSLALAL 1310
>Z47075-3|CAA87383.2| 182|Caenorhabditis elegans Hypothetical
protein E02H1.6 protein.
Length = 182
Score = 28.7 bits (61), Expect = 5.0
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +3
Query: 267 LLLAGPPGTGKTAIALAIAQELG 335
+L+ G PGTGK+ + +A++LG
Sbjct: 12 ILVTGSPGTGKSTLGQQVAEKLG 34
>AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical
protein F55F10.1 protein.
Length = 4368
Score = 28.7 bits (61), Expect = 5.0
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +3
Query: 252 MAGRALLLAGPPGTGKTAIALAIAQELGTKV 344
+ + +LL G PG GK++ +A+AQ G +
Sbjct: 1347 LISKPILLEGAPGCGKSSTVMALAQLTGNPI 1377
>Z70038-1|CAA93884.1| 2219|Caenorhabditis elegans Hypothetical
protein ZK1067.2 protein.
Length = 2219
Score = 28.3 bits (60), Expect = 6.7
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +3
Query: 270 LLAGPPGTGKTAIALAIAQEL 332
L+ GPPGTGKT I + I + +
Sbjct: 827 LIQGPPGTGKTHIGVQIVKTI 847
>U88169-7|ABQ13064.1| 205|Caenorhabditis elegans Hypothetical
protein T03F1.8b protein.
Length = 205
Score = 28.3 bits (60), Expect = 6.7
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 11/68 (16%)
Frame = +3
Query: 246 KKMAGRALLLAGPPGTGKTAIALAIAQELGTKVPFC-------PMVGSE----VYSTEIK 392
+KM R ++L+GP G GK+ I QE F P G E Y TE +
Sbjct: 9 RKMPCRPIVLSGPSGGGKSTILTRAMQEYPNSFAFSVSHTTRQPRAGEEHGKHYYFTEKE 68
Query: 393 KTEVLMEN 416
K + +++N
Sbjct: 69 KMQEMIKN 76
>U88169-6|AAB42236.2| 216|Caenorhabditis elegans Hypothetical
protein T03F1.8a protein.
Length = 216
Score = 28.3 bits (60), Expect = 6.7
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 11/68 (16%)
Frame = +3
Query: 246 KKMAGRALLLAGPPGTGKTAIALAIAQELGTKVPFC-------PMVGSE----VYSTEIK 392
+KM R ++L+GP G GK+ I QE F P G E Y TE +
Sbjct: 20 RKMPCRPIVLSGPSGGGKSTILTRAMQEYPNSFAFSVSHTTRQPRAGEEHGKHYYFTEKE 79
Query: 393 KTEVLMEN 416
K + +++N
Sbjct: 80 KMQEMIKN 87
>AF040659-1|AAK39389.1| 332|Caenorhabditis elegans Hypothetical
protein ZK484.3 protein.
Length = 332
Score = 28.3 bits (60), Expect = 6.7
Identities = 22/62 (35%), Positives = 30/62 (48%)
Frame = -1
Query: 382 VL*TSLPTIGQKGTLVPSS*AMARAIAVLPVPGGPAKSKARPAIFLLLIISTTIPAASRA 203
VL SL Q+G VPS+ + A A A PV K K +PA ++ TIP+
Sbjct: 51 VLRASLNEANQQGIKVPSTSSTASASAPAPVK-KEIKPKNKPAPVPVVEKKRTIPSKKER 109
Query: 202 DS 197
D+
Sbjct: 110 DA 111
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,022,221
Number of Sequences: 27780
Number of extensions: 395525
Number of successful extensions: 1132
Number of sequences better than 10.0: 71
Number of HSP's better than 10.0 without gapping: 1049
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1120
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1924757034
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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