Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6325
         (637 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1255 + 32119565-32119685,32120052-32120218,32120332-321205...    29   2.3  
05_07_0264 + 28779934-28781289                                         29   3.1  
05_07_0263 + 28775769-28777109                                         28   5.4  
03_01_0092 - 731069-731434,731569-733080                               28   7.1  

>04_04_1255 +
           32119565-32119685,32120052-32120218,32120332-32120532,
           32120700-32120747,32121079-32121238,32121540-32121777,
           32121874-32122021
          Length = 360

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -3

Query: 335 ERWGN*CYCITET*NSFFELGGGIFVFDVYWLR 237
           E W +  Y  TE   +++++ GG  VF  YW+R
Sbjct: 147 ESWSDVDYLRTEKPPAWYKIKGGKIVFPYYWMR 179


>05_07_0264 + 28779934-28781289
          Length = 451

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = +3

Query: 222 GFKWSPEPIDVK-NENAAAELEKRVLSLSYTVTSVTPSFKPKRITASRQKYAGSWYP 389
           GF  +P P ++  N++  A+    VL+   +  S+ PSF+ + +  + + YAG   P
Sbjct: 128 GFSVAPSPANIPTNQSVVAD---HVLAALQSFLSLEPSFRARPLYLTGESYAGKTIP 181


>05_07_0263 + 28775769-28777109
          Length = 446

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = +3

Query: 222 GFKWSPEPIDVK-NENAAAELEKRVLSLSYTVTSVTPSFKPKRITASRQKYAGSWYP 389
           GF  +P P  +  N++  A+    VL+   ++ S+ PSF+ + +  + + YAG   P
Sbjct: 126 GFSVAPSPAAIPTNQSVVAD---HVLAALQSLYSLEPSFRARPLYLTGESYAGKTIP 179


>03_01_0092 - 731069-731434,731569-733080
          Length = 625

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = +3

Query: 267 AAAELEKRVLSLSYTVTSVTPSFKPKRITASRQKYAGSWYPPVRTHKTSSPPV 425
           AAA      +SL+    +V P   P  ++A R  +A    PPV+ H    PPV
Sbjct: 50  AAATARPPPVSLAPAPVAVAPPATPAGLSALRV-HASPPPPPVKQHAAPPPPV 101


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,957,759
Number of Sequences: 37544
Number of extensions: 263320
Number of successful extensions: 507
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 507
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)