Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6325
         (637 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    23   2.5  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   3.3  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    22   4.3  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   5.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   5.7  

>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 4/56 (7%)
 Frame = +3

Query: 270 AAELEKRVLSLSYTVTSVTPSFKPKRITASRQKYAGSW----YPPVRTHKTSSPPV 425
           A  +EK      Y  T + P  K K+   S+     +W    YP +R HKT S  +
Sbjct: 309 AIVIEKGQSIWDYDSTYI-PKVKNKK-AGSKHLLQNTWLDPEYPMIRVHKTQSQTI 362


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 13/34 (38%), Positives = 15/34 (44%)
 Frame = +3

Query: 297 SLSYTVTSVTPSFKPKRITASRQKYAGSWYPPVR 398
           S+SY   S+T S   K  T  RQ     W P  R
Sbjct: 394 SVSYERGSMTVSVTSKPSTMERQTQTEVWIPKWR 427


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -3

Query: 530 YVQLSFI*IPMLSGFKVNKFEKQQIIYSI 444
           Y+QL F+ I  L  F VNK+  + ++ ++
Sbjct: 140 YMQLVFMGIVELIMFTVNKYVGEHLLMTV 168


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
 Frame = +3

Query: 300  LSYTVTSVTPSFKPKRITASR---QKYAGSWYPPVRTH 404
            L+ T+  V PS  P+ +  +    Q    SW PP  TH
Sbjct: 1103 LTQTMEDV-PSIPPEDVRCAALTSQSLQVSWQPPPNTH 1139


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
 Frame = +3

Query: 300  LSYTVTSVTPSFKPKRITASR---QKYAGSWYPPVRTH 404
            L+ T+  V PS  P+ +  +    Q    SW PP  TH
Sbjct: 1099 LTQTMEDV-PSIPPEDVRCAALTSQSLQVSWQPPPNTH 1135


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,137
Number of Sequences: 438
Number of extensions: 3231
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19071468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)