Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6323
         (747 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch...    30   0.40 
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb...    29   0.93 
SPAC22A12.16 |||ATP-citrate synthase subunit 2 |Schizosaccharomy...    26   5.0  
SPCC338.10c |cox5||cytochrome c oxidase subunit V|Schizosaccharo...    26   5.0  
SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom...    26   6.6  
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large...    25   8.7  
SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr...    25   8.7  

>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1316

 Score = 29.9 bits (64), Expect = 0.40
 Identities = 19/74 (25%), Positives = 32/74 (43%)
 Frame = +1

Query: 127  YGPGSHMPDAAGYQEQETSSDGVCCQHGAGSYASWSFRSPVPTRTVCNTYRTRHETENGN 306
            Y PGS MP A  Y +Q T S  +    G    +++S     P +++ ++        +G 
Sbjct: 1068 YTPGSDMPSAKLYDQQLTLSPSLMTNQG----SNFSSTDSTPRKSINSSDVESRSKTDGP 1123

Query: 307  KDWPELYSAAHARQ 348
            K   +L    H R+
Sbjct: 1124 KSMHDLIKQLHMRK 1137


>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 929

 Score = 28.7 bits (61), Expect = 0.93
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +2

Query: 5   RHEAHTVPGRSSWGGLNVAYEMQQDPNKPGVSGM-ASTSKDN 127
           + E H++PG  SWGG+ V  + +  P    ++G+  S  KD+
Sbjct: 815 KEEDHSLPGWGSWGGVGVK-QRKTKPKVKKIAGLDPSKRKDS 855


>SPAC22A12.16 |||ATP-citrate synthase subunit 2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 492

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 16/44 (36%), Positives = 18/44 (40%)
 Frame = +1

Query: 511 FECSEPRSAARASVGAGIAVFNGASPALRYSITTLMPAPAPHGR 642
           FEC    + ARA    GI      S A+       M  PAP GR
Sbjct: 261 FECGAKWAVARAPESLGIKTSGEESGAINADHGPPMVFPAPFGR 304


>SPCC338.10c |cox5||cytochrome c oxidase subunit
           V|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 174

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +2

Query: 269 IRTERAMKPKMETKIGPSCTAPHMLGNELNPESGAAA 379
           IRT+ A  P+  T+     +  +M  N++NP SG A+
Sbjct: 116 IRTQAAPSPRTMTREWQEKSNEYMKENKINPISGEAS 152


>SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 564

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -1

Query: 177 FLFLIAGGIGHMGTGPILSLLVL 109
           ++ LIAGG+G   T PIL  L+L
Sbjct: 416 YVLLIAGGVGFSYTLPILRDLIL 438


>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
            subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1405

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = -3

Query: 469  VDERWRNQWVWTTAPGGMCGQLGAQLLLKPGRSPTFR 359
            VD  W         PG   G +GAQ + +PG   T +
Sbjct: 1029 VDRCWEKYMRAKVEPGTAVGAIGAQSIGEPGTQMTLK 1065


>SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 319

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +1

Query: 511 FECSEPRSAARASVGAGIAVFNGASPALRYSITTLMPAPAPHGR 642
           FE S+PR   R  +   + V N A P+LR  +      P+   R
Sbjct: 268 FEESQPRINGREKLRRSVKVINYAIPSLRTKLRRDFDLPSDRKR 311


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,027,379
Number of Sequences: 5004
Number of extensions: 59300
Number of successful extensions: 173
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)