Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-6323
(747 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0573 + 23359968-23361044,23361112-23361255,23361458-23361841 31 0.74
02_01_0583 + 4320543-4321613,4321725-4321967,4323506-4323883 31 0.97
10_08_0797 + 20646091-20646519,20646531-20647460 31 1.3
06_03_0981 + 26527005-26527260,26527457-26527770 30 1.7
01_06_0944 + 33211652-33212427,33212492-33212660,33212825-332129... 30 2.2
01_05_0575 + 23372759-23373676,23373798-23373941,23374065-23374427 30 2.2
04_04_1441 - 33621423-33622118,33622251-33622315,33623140-336232... 29 3.0
03_02_0477 - 8770905-8770985,8771164-8771361,8771939-8772025,877... 29 3.0
02_03_0293 - 17372071-17372217,17372301-17372471,17373334-173734... 29 3.0
08_01_0005 + 47929-48201,48663-48788,49009-49054,49188-49270,496... 29 5.2
11_06_0481 + 24092574-24093962 28 6.9
10_05_0052 - 8586577-8588007 28 6.9
07_03_0982 + 23116343-23117089,23117227-23117313,23117424-231175... 28 6.9
07_03_0230 + 15526504-15526673,15526809-15526867,15527135-155271... 28 6.9
01_01_0889 + 7008077-7009261 28 6.9
09_06_0177 + 21365314-21366100,21367451-21367578,21367715-213678... 28 9.1
>01_05_0573 + 23359968-23361044,23361112-23361255,23361458-23361841
Length = 534
Score = 31.5 bits (68), Expect = 0.74
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -2
Query: 737 MPVRGIAKRAFTASRWSRRCSRLPHMLLQTHVLPCGAGAG 618
+P++ + A +SRW R P +L+ H+LP G AG
Sbjct: 84 LPIKDAVRTAALSSRWRRIWLSAPLVLVDGHLLPPGEEAG 123
>02_01_0583 + 4320543-4321613,4321725-4321967,4323506-4323883
Length = 563
Score = 31.1 bits (67), Expect = 0.97
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -2
Query: 737 MPVRGIAKRAFTASRWSRRCSRLPHMLLQTHVLPCGAG 624
+P + A+ A +SRW R P +L+ TH+LP G
Sbjct: 94 LPAKDGARTAVLSSRWRRLWRSTPLVLVDTHLLPRRGG 131
>10_08_0797 + 20646091-20646519,20646531-20647460
Length = 452
Score = 30.7 bits (66), Expect = 1.3
Identities = 21/54 (38%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = -2
Query: 629 AGAGMRVVMLYRSAGLAPLKTAIPAPTDARAADRGSEHSKNY-VPLGLQHLFRP 471
A AG RVV L AP PAP A+ R H KN+ VP G + P
Sbjct: 103 ATAGSRVVHLGYEHSAAPAPAPAPAPAPAKTTAR--RHRKNFRVPPGARRRLAP 154
>06_03_0981 + 26527005-26527260,26527457-26527770
Length = 189
Score = 30.3 bits (65), Expect = 1.7
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = -2
Query: 377 PQPHFPDSIRCRACAALYNSGQSLFPFSVSWRVLY 273
P+P P R RAC Y G++L P S WR Y
Sbjct: 67 PRP-VPSPPRQRACLCRYGRGENLVPASDEWRRRY 100
>01_06_0944 +
33211652-33212427,33212492-33212660,33212825-33212936,
33213061-33213159,33213237-33213394,33214911-33215062,
33215162-33215249,33215399-33215476,33215516-33215690,
33216701-33217002
Length = 702
Score = 29.9 bits (64), Expect = 2.2
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -3
Query: 151 RAYGNRAHIVFTSTGHPTDTWFIWILLHFVG 59
R+ NR+ + + S +PTDTW + L FVG
Sbjct: 144 RSVSNRSRLRWQSFDYPTDTWLQGMNLGFVG 174
>01_05_0575 + 23372759-23373676,23373798-23373941,23374065-23374427
Length = 474
Score = 29.9 bits (64), Expect = 2.2
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = -2
Query: 743 ADMPVRGIAKRAFTASRWSRRCSRLPHMLLQTHVL-PCGAGAGMRVV 606
A +PV+ A+ A ASRW R S P +L +L G AG+ V
Sbjct: 49 ARLPVKDAARTAALASRWRRVWSSTPLVLRDADLLFSAGEAAGVAAV 95
>04_04_1441 -
33621423-33622118,33622251-33622315,33623140-33623227,
33623957-33625570
Length = 820
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = +1
Query: 532 SAARASVGAGIAVFNGASP--ALRYSITTLMPAPAPHGRTCVWRSMWGSL 675
SA A++ +A NG++ A+R+ ++T +PA APH +W L
Sbjct: 10 SAEAAAIARRLASCNGSARERAVRHLLSTFLPASAPHLSASDLLKLWKGL 59
>03_02_0477 -
8770905-8770985,8771164-8771361,8771939-8772025,
8772094-8772179,8772270-8772368,8772431-8772551,
8773251-8773331,8773643-8773723,8773972-8774088,
8774185-8774256,8774621-8775055
Length = 485
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = -2
Query: 659 LLQTHVLPCGAGAGMRVVMLYRSAGLAPLKTAIPAPTDARAADRGSEHSKNYVPL 495
+L + C AGA + V LY+ K+A P A G H+ N +P+
Sbjct: 153 MLAVSIAACKAGAAEKEVPLYKHIAELVGKSATTLPIPAITVINGGTHAGNSLPI 207
>02_03_0293 -
17372071-17372217,17372301-17372471,17373334-17373435,
17373803-17374216,17374369-17374512,17374634-17375647
Length = 663
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = -2
Query: 737 MPVRGIAKRAFTASRWSRRCSRLPHMLLQTHVLPCGAGAGMRVVMLYRSAGLAP 576
+P R A+ A ++RW +P L+ H+ P G G G V + R P
Sbjct: 87 LPARDGARTAALSTRWRGVWHSVPLALVDAHLAPQGRGGGGVVAAVSRVLAAHP 140
>08_01_0005 +
47929-48201,48663-48788,49009-49054,49188-49270,
49651-49728,49831-49884,50004-50138,50222-51691
Length = 754
Score = 28.7 bits (61), Expect = 5.2
Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 4/47 (8%)
Frame = +2
Query: 290 KPKM-ETKIG-PSCTAP--HMLGNELNPESGAAARLQEQLSAELAAH 418
KP + ETKI P+ T P +++G + PES A RLQE+ A++ +
Sbjct: 165 KPLLKETKIPLPTKTYPGHNIIGVLMGPESNAQKRLQEETGAKIRVY 211
>11_06_0481 + 24092574-24093962
Length = 462
Score = 28.3 bits (60), Expect = 6.9
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Frame = +1
Query: 451 SATAHQQGRNRC--WRPRGT*FFECSEPRSAARASVGAGIAVFNGASPALRYSITTLMPA 624
+A+ H+Q R RC WRP T + P S+ A G G++ ++ L S +T +
Sbjct: 14 AASIHRQYR-RCNPWRPCWT---PVAAPSSSGAARRGHGVSPWS-----LGVSSSTSSSS 64
Query: 625 PAPHGRTC 648
PHGR C
Sbjct: 65 TPPHGRRC 72
>10_05_0052 - 8586577-8588007
Length = 476
Score = 28.3 bits (60), Expect = 6.9
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
Frame = +1
Query: 625 PAPHGRTCVWRSMW---GSLLQRRDHLLAV 705
PAP GR CV RS W G L R D+L ++
Sbjct: 439 PAPPGRCCVRRSSWSFFGYELDRVDYLASL 468
>07_03_0982 +
23116343-23117089,23117227-23117313,23117424-23117555,
23118135-23118269,23118644-23118709,23118797-23118907,
23119237-23119329,23119555-23119659,23119752-23119829
Length = 517
Score = 28.3 bits (60), Expect = 6.9
Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 4/68 (5%)
Frame = +1
Query: 127 YGPGSHMPDAAGYQEQETSSDGVCCQHGAGSYASWSFRSPVPTRTVCNTY----RTRHET 294
YG G P AGY + + ++G G G + R PTR+ + R+ +
Sbjct: 131 YG-GYQPPPTAGYGDDDYLNEGAYAYSGDGGSEPYGARGTAPTRSGAAMFDDYGRSIGPS 189
Query: 295 ENGNKDWP 318
G WP
Sbjct: 190 SGGADQWP 197
>07_03_0230 +
15526504-15526673,15526809-15526867,15527135-15527139,
15528165-15528268,15528362-15528437,15528646-15528704,
15528803-15528868,15529372-15529455,15529608-15529672,
15529758-15529840,15529949-15530039,15530142-15530194,
15530285-15530428,15530562-15530675
Length = 390
Score = 28.3 bits (60), Expect = 6.9
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = -3
Query: 526 ALSTRRTTSPWASSTCSGLVDERWRNQWVWTTAPGGMCGQLGAQL 392
A +R+ T+ W V +N W+ TAPG G L A++
Sbjct: 325 ATGSRQITAAWQDIGVGPGVAVEAKNVWLHATAPGRFTGSLTAEV 369
>01_01_0889 + 7008077-7009261
Length = 394
Score = 28.3 bits (60), Expect = 6.9
Identities = 23/66 (34%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
Frame = +2
Query: 11 EAHTVPGRSSWGGLNVAYEMQQDPNKPGVSGMASTSKDNMGPVPICPMPPA----IRNKK 178
EA RS + Y ++ NKP ST+ P P P PP IR K+
Sbjct: 238 EAFFSSSRSFSSDSSEFYTKKKKRNKPKKKS-PSTASSKAAPPPPPPPPPTTRHQIRRKR 296
Query: 179 RAAMAS 196
RAA AS
Sbjct: 297 RAARAS 302
>09_06_0177 +
21365314-21366100,21367451-21367578,21367715-21367870,
21368006-21368196,21369392-21369434,21369537-21369627,
21369859-21369935,21370278-21370366,21370474-21370657,
21370885-21371138,21371465-21371567,21371646-21371977,
21372060-21372504
Length = 959
Score = 27.9 bits (59), Expect = 9.1
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -3
Query: 499 PWASSTCSGLVDERWRNQWV 440
P + C+ L+ RWRN WV
Sbjct: 38 PAPDAACTSLLSRRWRNLWV 57
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,786,287
Number of Sequences: 37544
Number of extensions: 517863
Number of successful extensions: 1807
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1806
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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