Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-6323
(747 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U20555-1|AAC46918.1| 839|Caenorhabditis elegans zinc finger pro... 56 3e-08
L23645-6|AAO91714.1| 635|Caenorhabditis elegans Zinc finger pro... 56 3e-08
L23645-4|AAK26137.1| 867|Caenorhabditis elegans Zinc finger pro... 56 3e-08
U22831-6|AAK20068.1| 579|Caenorhabditis elegans Hypothetical pr... 35 0.070
Z75541-3|CAA99855.1| 1425|Caenorhabditis elegans Hypothetical pr... 31 0.87
U53154-5|AAC25853.1| 347|Caenorhabditis elegans Hypothetical pr... 30 1.5
AL132902-3|CAC14419.1| 271|Caenorhabditis elegans Hypothetical ... 29 3.5
AL132902-2|CAB81987.1| 271|Caenorhabditis elegans Hypothetical ... 29 3.5
Z81512-3|CAE46668.1| 3175|Caenorhabditis elegans Hypothetical pr... 29 4.6
Z81512-2|CAB04172.2| 3184|Caenorhabditis elegans Hypothetical pr... 29 4.6
Z81071-6|CAB03010.1| 464|Caenorhabditis elegans Hypothetical pr... 28 6.1
U00057-1|AAA50726.2| 347|Caenorhabditis elegans Hypothetical pr... 28 8.1
AL032627-2|CAB63353.2| 521|Caenorhabditis elegans Hypothetical ... 28 8.1
>U20555-1|AAC46918.1| 839|Caenorhabditis elegans zinc finger
protein protein.
Length = 839
Score = 56.0 bits (129), Expect = 3e-08
Identities = 25/38 (65%), Positives = 31/38 (81%)
Frame = +2
Query: 527 LDQLLERQWEQGSQFLMEQAQHFDIASLLSCLHQLRTE 640
++QLLERQW+QGS LM A HFD+A LLSCL QL++E
Sbjct: 593 MEQLLERQWDQGSSLLMANA-HFDVAQLLSCLFQLKSE 629
>L23645-6|AAO91714.1| 635|Caenorhabditis elegans Zinc finger
protein protein 1,isoform c protein.
Length = 635
Score = 56.0 bits (129), Expect = 3e-08
Identities = 25/38 (65%), Positives = 31/38 (81%)
Frame = +2
Query: 527 LDQLLERQWEQGSQFLMEQAQHFDIASLLSCLHQLRTE 640
++QLLERQW+QGS LM A HFD+A LLSCL QL++E
Sbjct: 361 MEQLLERQWDQGSSLLMANA-HFDVAQLLSCLFQLKSE 397
>L23645-4|AAK26137.1| 867|Caenorhabditis elegans Zinc finger
protein protein 1,isoform a protein.
Length = 867
Score = 56.0 bits (129), Expect = 3e-08
Identities = 25/38 (65%), Positives = 31/38 (81%)
Frame = +2
Query: 527 LDQLLERQWEQGSQFLMEQAQHFDIASLLSCLHQLRTE 640
++QLLERQW+QGS LM A HFD+A LLSCL QL++E
Sbjct: 593 MEQLLERQWDQGSSLLMANA-HFDVAQLLSCLFQLKSE 629
>U22831-6|AAK20068.1| 579|Caenorhabditis elegans Hypothetical
protein F47D12.7 protein.
Length = 579
Score = 34.7 bits (76), Expect = 0.070
Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Frame = +1
Query: 148 PDAAGYQEQETSS--DGVCCQHGAGSYASWSFRSPVPTRTVCNTYRTRHETENGNKDWPE 321
PDA Y+ T D + C + W+ R VCNT R +T N N D P
Sbjct: 250 PDATKYEVIRTRQPMDAIVC------FGGWASRGVAQKIEVCNTRSDRWQTCNFNYDIPN 303
Query: 322 LYSAAHARQRIE 357
++ A H + +E
Sbjct: 304 IHRAYHGIEVVE 315
>Z75541-3|CAA99855.1| 1425|Caenorhabditis elegans Hypothetical
protein F52B5.3 protein.
Length = 1425
Score = 31.1 bits (67), Expect = 0.87
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +1
Query: 436 SRPTDSATAH-QQGRNRCWRPRGT*FFECSEPRSAARA 546
+ P SA A QQ R RC PRG F C P S ++
Sbjct: 503 TNPNQSAQALLQQKRERCLMPRGPLTFTCENPASTTKS 540
>U53154-5|AAC25853.1| 347|Caenorhabditis elegans Hypothetical
protein C33G8.10 protein.
Length = 347
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = -2
Query: 380 GPQPHFPDSIRCRACAALY 324
GP+PHF I CRACAA +
Sbjct: 10 GPEPHF-GGISCRACAAFF 27
>AL132902-3|CAC14419.1| 271|Caenorhabditis elegans Hypothetical
protein Y71A12B.3 protein.
Length = 271
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +1
Query: 223 ASWSFRSPVPTRTVCNTYRTRHETENGNKDWPELY 327
A+ F P TV YR RH TE +WP +Y
Sbjct: 218 ANLMFGPPRRRTTVAAWYRQRHATELTRPEWPLVY 252
>AL132902-2|CAB81987.1| 271|Caenorhabditis elegans Hypothetical
protein Y71A12B.2 protein.
Length = 271
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +1
Query: 223 ASWSFRSPVPTRTVCNTYRTRHETENGNKDWPELY 327
A+ F P TV YR RH TE +WP +Y
Sbjct: 218 ANLMFGPPRRRTTVAAWYRQRHATELTRPEWPLVY 252
>Z81512-3|CAE46668.1| 3175|Caenorhabditis elegans Hypothetical protein
F25C8.3b protein.
Length = 3175
Score = 28.7 bits (61), Expect = 4.6
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -1
Query: 720 RETSVHCKQMVTTL*QTTPHAPPDARSSVRSWCRHESSDAISK 592
R TSVH K+++ T+ + P P D+ + S + + ISK
Sbjct: 3019 RRTSVHMKKVLPTMKEDIPEDPEDSEDVIDSNSTGQVTSRISK 3061
>Z81512-2|CAB04172.2| 3184|Caenorhabditis elegans Hypothetical protein
F25C8.3a protein.
Length = 3184
Score = 28.7 bits (61), Expect = 4.6
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -1
Query: 720 RETSVHCKQMVTTL*QTTPHAPPDARSSVRSWCRHESSDAISK 592
R TSVH K+++ T+ + P P D+ + S + + ISK
Sbjct: 3028 RRTSVHMKKVLPTMKEDIPEDPEDSEDVIDSNSTGQVTSRISK 3070
>Z81071-6|CAB03010.1| 464|Caenorhabditis elegans Hypothetical
protein F28F8.7 protein.
Length = 464
Score = 28.3 bits (60), Expect = 6.1
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +1
Query: 172 QETSSDGVCCQHGAGSYASWSFRSPVPTRTVCNTYRTRHETEN 300
++ SSD VC +G AS P+ R +C R+ +EN
Sbjct: 83 RKNSSDSVCSSKKSGKQASVDQVPPLLQRALCTKSRSPKNSEN 125
>U00057-1|AAA50726.2| 347|Caenorhabditis elegans Hypothetical
protein T24G10.2 protein.
Length = 347
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -1
Query: 675 QTTPHAPPDARSSVRSWCRHESSDAISK 592
+TT PPD SS++S R +SDA+ +
Sbjct: 137 KTTTRIPPDMASSIKSTRRAAASDALKQ 164
>AL032627-2|CAB63353.2| 521|Caenorhabditis elegans Hypothetical
protein Y41C4A.2 protein.
Length = 521
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -3
Query: 454 RNQWVWTTAPGGMCGQLGAQLLLKPGRSP 368
RN W +PGG+CG G L+ G +P
Sbjct: 165 RNPWALDCSPGGLCG--GEAALVADGGAP 191
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,655,874
Number of Sequences: 27780
Number of extensions: 379825
Number of successful extensions: 1307
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1096
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1293
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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