Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6322
         (343 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_1152 + 9740279-9740374,9740530-9740940                           28   2.2  
07_01_0624 + 4651995-4654715                                           27   3.9  
04_03_0153 + 11919769-11919880,11920190-11920488,11921909-119220...    27   3.9  
02_02_0351 + 9257204-9261388                                           26   8.9  

>06_01_1152 + 9740279-9740374,9740530-9740940
          Length = 168

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = -2

Query: 333 IGRIGYRAPPREKWMLFCIKQKKKCNIRRCIKSHH 229
           +  +G R    ++W++    QK+KC  R C    H
Sbjct: 1   MAELGLRLTGGDRWIVSVRAQKRKCRERSCASGSH 35


>07_01_0624 + 4651995-4654715
          Length = 906

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 23/97 (23%), Positives = 40/97 (41%), Gaps = 1/97 (1%)
 Frame = -2

Query: 309 PPREKWMLFCIKQKKKCNIRRCIKSHHISYEIILESFISLPFPVDCRAILYITFEFSKPL 130
           P +E W LFC K   + + R C  +     E I+E    LP  +     L ++++     
Sbjct: 338 PKQEAWTLFCQKAFSRLDDRSCPHNLKTVAERIVEKCQGLPLALVAIGSL-LSYKEMDEH 396

Query: 129 NSRRLVNLIQL*LKKN-IFGDTKAILKLKYHSLTTYV 22
                 N ++  L  N       ++L L Y+ L +Y+
Sbjct: 397 EWELFYNQLRWQLSNNPELSWVASVLNLSYNDLPSYL 433


>04_03_0153 +
           11919769-11919880,11920190-11920488,11921909-11922024,
           11922113-11922248,11922959-11923006,11924130-11924228,
           11924317-11924385,11924465-11924599,11924687-11924755,
           11925221-11925276,11925465-11925624,11926534-11926698,
           11927484-11927568,11927646-11927849,11928396-11928487,
           11928571-11928613,11930727-11930884,11931520-11931630,
           11931947-11932012,11933716-11933784,11934181-11934255,
           11934330-11934506,11934598-11934683,11936259-11936313,
           11936901-11936939,11938105-11938230,11938319-11938432,
           11939208-11939265,11939485-11939623,11939698-11939783,
           11939842-11940041
          Length = 1148

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -3

Query: 311 PPLEKSGCCFV*NKKKSVIYEDVLKVI 231
           P L      FV   KK V Y+D+LKV+
Sbjct: 773 PVLSPESSLFVLKSKKQVSYQDILKVL 799


>02_02_0351 + 9257204-9261388
          Length = 1394

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
 Frame = -2

Query: 258 NIRRCIKSHHISYEIILESFISLPFPVD-CRAILYITFEFSK---PLNSRRLVNLIQL*L 91
           N  + I   ++  EI  +  +SLP  V     + ++   +SK   P +   LVNL  L  
Sbjct: 658 NFSKLIHLRYLKLEIPYDVELSLPNAVSRFYHLKFLDLGYSKCILPKDINHLVNLCLLNA 717

Query: 90  KKNIFGDTKAILKLKY 43
           +K +  +   I K+KY
Sbjct: 718 RKELCSNIPGIGKMKY 733


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,612,431
Number of Sequences: 37544
Number of extensions: 110948
Number of successful extensions: 197
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 482105440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)