Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6322
         (343 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF099913-15|AAC68744.1|  284|Caenorhabditis elegans Hypothetical...    27   3.5  
Z73977-1|CAA98290.1|  573|Caenorhabditis elegans Hypothetical pr...    26   6.1  
U80842-17|AAB37953.1|  155|Caenorhabditis elegans Hypothetical p...    26   6.1  
AF024503-16|AAG24086.2|  287|Caenorhabditis elegans Serpentine r...    26   8.1  

>AF099913-15|AAC68744.1|  284|Caenorhabditis elegans Hypothetical
           protein C29F9.1 protein.
          Length = 284

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = -2

Query: 147 EFSKPLNSRRLVNLIQL*LKKNIFGDTKAILKLKYH--SLTTYV 22
           E  K L +  +V+ + L + K +  DTKA+  LK+H  SLT Y+
Sbjct: 145 ELKKVLEAAEIVD-VTLNMMKTLNPDTKAMWLLKFHTTSLTEYL 187


>Z73977-1|CAA98290.1|  573|Caenorhabditis elegans Hypothetical
           protein T28B11.1 protein.
          Length = 573

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 17/59 (28%), Positives = 29/59 (49%)
 Frame = -2

Query: 276 KQKKKCNIRRCIKSHHISYEIILESFISLPFPVDCRAILYITFEFSKPLNSRRLVNLIQ 100
           K+  +  + R   +    + I+LE    +P P D R +  I  ++ KP  SRR+V  I+
Sbjct: 430 KRPPRSPMNRSFGNEQNEHSIVLERTCRIPHPKDRRVV--IQLKYCKP--SRRMVLTIE 484


>U80842-17|AAB37953.1|  155|Caenorhabditis elegans Hypothetical
           protein ZC239.16 protein.
          Length = 155

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -3

Query: 326 ELGTGPPLEKSGCCFV 279
           E  TGP +EK+GC F+
Sbjct: 33  ECKTGPKIEKTGCIFI 48


>AF024503-16|AAG24086.2|  287|Caenorhabditis elegans Serpentine
           receptor, class x protein23 protein.
          Length = 287

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = +1

Query: 175 VYWKR**NKTFQNNFVTYMMTFNTSSYITLFFLFY 279
           V+W    N+ F N+  T+M  F    +  ++++ Y
Sbjct: 105 VFWYLRYNRIFSNSNTTFMKNFGGLVFAVIYYILY 139


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,952,618
Number of Sequences: 27780
Number of extensions: 114756
Number of successful extensions: 290
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 290
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 440341558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)