Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6321
         (689 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c...    27   1.9  
SPCC965.11c |||amino acid transporter |Schizosaccharomyces pombe...    26   5.9  
SPBC1685.11 |rlp1||RecA family ATPase Rlp1|Schizosaccharomyces p...    25   7.8  

>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1316

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -3

Query: 264  KAAMFCGQMTSHWHEILVDVSFP*VSY 184
            +A  FCG+M + W  +L DV++P  +Y
Sbjct: 1065 RAKKFCGRMANLWRFVL-DVTYPQAAY 1090


>SPCC965.11c |||amino acid transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 537

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +2

Query: 263 LVLYKRFQCYQVLSINVLG--SFYFKYC*VLFICRIY 367
           L+ +  F CYQ+L ++V G   +   +  +LFI   Y
Sbjct: 160 LIFWGFFTCYQMLGVSVFGESEYILAFIKLLFITGFY 196


>SPBC1685.11 |rlp1||RecA family ATPase Rlp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 363

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 7/26 (26%), Positives = 14/26 (53%)
 Frame = +2

Query: 191 TYGNETSTKISCQCDVIWPQNMAALV 268
           ++  +   KI  QC ++WP   + +V
Sbjct: 183 SFWEDAERKIDAQCAILWPMEFSGVV 208


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,618,853
Number of Sequences: 5004
Number of extensions: 50874
Number of successful extensions: 89
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)