Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6319
         (702 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF024503-11|AAG24091.2|  325|Caenorhabditis elegans Serpentine r...    31   1.1  
Z75955-12|CAB00115.2|  485|Caenorhabditis elegans Hypothetical p...    28   7.4  
Z81533-13|CAB04336.2|  323|Caenorhabditis elegans Hypothetical p...    27   9.8  

>AF024503-11|AAG24091.2|  325|Caenorhabditis elegans Serpentine
           receptor, class u protein24 protein.
          Length = 325

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +1

Query: 292 YKSSQRIIIIFKT-NLKHVLKILIFNTKIFFIAVAKLRLWTGGCCSPLAQKRMPSL 456
           YK+    I +F    L HV+ +L F T++F++ +    ++T  C S L    + SL
Sbjct: 57  YKNKNVNIQLFGVITLSHVMCLLFFTTELFYLRLPMAGVFTSWCASVLPNGYLISL 112


>Z75955-12|CAB00115.2|  485|Caenorhabditis elegans Hypothetical
           protein R07B7.6 protein.
          Length = 485

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +3

Query: 459 HMKSSWPNG*DVRCIRVERCTGMRISGGYFSNE-IRTQQIFTNQ 587
           H   S PNG D  C    +  G+ I G  + NE I++QQ+  N+
Sbjct: 387 HWDFSGPNGFDKECHSKWKRHGICIMGVEYMNELIKSQQVIANK 430


>Z81533-13|CAB04336.2|  323|Caenorhabditis elegans Hypothetical
           protein F36G9.6 protein.
          Length = 323

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/52 (23%), Positives = 24/52 (46%)
 Frame = +1

Query: 271 SPSITDIYKSSQRIIIIFKTNLKHVLKILIFNTKIFFIAVAKLRLWTGGCCS 426
           S  +T+ Y+ +  + +     L H + +L F    F+I +    ++T  C S
Sbjct: 50  SKFLTEYYERNVNVQLFGVITLSHFMSLLFFIADFFYIRLPVTGIFTSWCAS 101


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,400,412
Number of Sequences: 27780
Number of extensions: 314738
Number of successful extensions: 660
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 660
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)