Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6318
         (688 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein Rad4|Schizosac...    38   0.001
SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ...    36   0.004
SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces ...    27   3.4  
SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces p...    26   4.4  
SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|...    26   4.4  
SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC su...    25   7.8  

>SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein
           Rad4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 648

 Score = 38.3 bits (85), Expect = 0.001
 Identities = 16/41 (39%), Positives = 25/41 (60%)
 Frame = -1

Query: 169 GGSIRKDMSSKVTHLIAAAATGEKYRYASGFGLPVLARSWV 47
           GG+   D++  VTHLIA  ++G KY YA  + + V+   W+
Sbjct: 128 GGTFCPDLTRDVTHLIAGTSSGRKYEYALKWKINVVCVEWL 168



 Score = 33.1 bits (72), Expect = 0.039
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = -1

Query: 202 QTYLITLIHYMGGSIRKDMSSKVTHLIAAAATGEKYRYA--SGFGLPVLARSWVDACWE 32
           +T + T    +G + R D +  VTHLIA      KY++A  S   + +++  W+   +E
Sbjct: 22  RTEISTKATKLGAAYRSDFTKDVTHLIAGDFDTPKYKFAAKSRPDIKIMSSEWIPVLYE 80


>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 36.3 bits (80), Expect = 0.004
 Identities = 18/50 (36%), Positives = 28/50 (56%)
 Frame = -1

Query: 196 YLITLIHYMGGSIRKDMSSKVTHLIAAAATGEKYRYASGFGLPVLARSWV 47
           YL  L+   G +  KD+    T LIAA++ G+KY  A  + +P +  SW+
Sbjct: 333 YLEKLLLACGATYTKDLKPTNTLLIAASSYGQKYGAAKVWNIPTVHHSWL 382


>SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 444

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 15/56 (26%), Positives = 25/56 (44%)
 Frame = -3

Query: 563 GN*LLPATPFTWNSYFGITLNFTPTSFT*KVKIFLNYRMLRSYLNPYSETFFIGAP 396
           G  ++   P+ +   + I  ++       KVK   NYR L+ Y+NP +     G P
Sbjct: 270 GECIVHKAPWLFQGVWSIIKSWLDPVVVSKVKFTRNYRDLQQYINPDNILKEFGGP 325


>SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 723

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -1

Query: 169 GGSIRKDMSSKVTHLIAAAATGEKYRYASGFG-LPVLARSWV 47
           G  +  D S   THLIAA    EK + A   G + V+  +W+
Sbjct: 521 GAEVVLDFSVPPTHLIAAKIRTEKVKKAVSMGNIKVVKLNWL 562


>SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 456

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 519 LWHNAKFYPHFIYVESENIFE 457
           LW   + Y HF+Y+ S  I+E
Sbjct: 178 LWFFNEVYRHFLYINSTRIYE 198


>SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC
           subunit Psc3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
 Frame = +3

Query: 90  YLYFSPVAAAAIRCVTLLDMS----LRIEPPM*CINVIRYVCQHSKTLL 224
           YLY S V    +  V  +  S    +R    + C+N++ ++C+ SK LL
Sbjct: 196 YLYNSTVFEDIMSWVVAMSSSTMRPIRHTATVFCLNIMTFLCEKSKELL 244


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,751,727
Number of Sequences: 5004
Number of extensions: 56146
Number of successful extensions: 136
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)