Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-6318
(688 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0574 + 4582098-4582331,4582450-4582492,4582683-4582757,458... 37 0.013
08_02_0662 + 19789406-19789546,19789646-19789779,19790272-197904... 33 0.21
02_04_0178 + 20672705-20672919,20673385-20673486,20673925-206740... 31 1.1
02_05_1069 + 33865106-33865407,33865584-33866274 30 1.5
12_01_0313 + 2388488-2388560,2389285-2389462,2390221-2390331,239... 30 2.0
01_01_1164 + 9263990-9264409,9264498-9264603,9264825-9264877,926... 29 2.6
03_02_0726 + 10722759-10722857,10722969-10723058,10723141-107232... 29 3.5
10_08_0959 - 21813756-21814097,21814462-21814570,21814688-218147... 29 4.6
04_03_0534 - 16845094-16845511,16846180-16846211 29 4.6
01_06_1427 + 37296883-37297588,37298504-37298658,37300596-37300955 29 4.6
01_07_0126 - 41222916-41222942,41223120-41223190,41223478-412235... 28 6.0
06_01_0321 + 2328932-2328963,2329084-2329243,2329388-2329576,233... 28 8.0
02_02_0354 + 9283886-9285505,9287158-9287251,9287817-9289915 28 8.0
>11_01_0574 +
4582098-4582331,4582450-4582492,4582683-4582757,
4584344-4584465,4584547-4584654,4585975-4586119,
4586786-4586869,4586997-4587345,4587527-4587666,
4587784-4588037,4588409-4588576,4588686-4588976,
4589329-4589538,4589778-4589860,4590288-4590414,
4593624-4595516,4596274-4596395,4596487-4596628,
4596719-4596940,4597489-4597563,4598351-4598452,
4598616-4598819
Length = 1730
Score = 37.1 bits (82), Expect = 0.013
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = -1
Query: 193 LITLIHYMGGSIRKDMSSKVTHLIAAAATGEKYRYASGFGLPVLARSWVDAC 38
L L +G + + KVTHLI A+G KY G+P + W+ C
Sbjct: 617 LKNLCFILGSKFTEKATKKVTHLICKFASGPKYEAYYSRGIPTITAEWLFEC 668
Score = 35.5 bits (78), Expect = 0.040
Identities = 14/51 (27%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = -1
Query: 184 LIHYMGGSIRKDMSSKVTHLIAAAATGEKYRYA-SGFGLPVLARSWVDACW 35
L+ MGG+++ + +IA KY++A + P+++R+W++ CW
Sbjct: 164 LVTAMGGTLQNKAYTDANFVIAKDVLAAKYKWAVNTLKKPIVSRNWLEQCW 214
>08_02_0662 +
19789406-19789546,19789646-19789779,19790272-19790476,
19791233-19791367,19792117-19792746,19793180-19793356,
19795175-19795198
Length = 481
Score = 33.1 bits (72), Expect = 0.21
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = -1
Query: 193 LITLIHYMGGSIRKDMSSKVTHLIAAAATGEKYRYASGFGLPVLARSWVDAC 38
L+ LI G S MS +THL+ G+KY A V++ W + C
Sbjct: 25 LVRLIAETGASYVGAMSRSITHLVCWRLEGKKYDIARRLRTRVVSHRWFEDC 76
>02_04_0178 +
20672705-20672919,20673385-20673486,20673925-20674002,
20674046-20674058
Length = 135
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +2
Query: 20 VVSPFPARVDPGAREHGQAEPGRVPVLLARSCGR 121
V+SP PAR DP G A+P P + GR
Sbjct: 4 VISPLPARADPPLATTGGADPAASPTVTTTIGGR 37
>02_05_1069 + 33865106-33865407,33865584-33866274
Length = 330
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = -1
Query: 172 MGGSIRKDMSSKVTHLIAAAATGEKYRYASGFGLPVLARSWVDACWERRDDP 17
+G + D+ +VTH++A T K +A FG ++ W++A R P
Sbjct: 270 LGATCADDVGPEVTHVVATNPTTFKAVWAQVFGKLLVNPEWINAAHFRWSKP 321
>12_01_0313 +
2388488-2388560,2389285-2389462,2390221-2390331,
2391280-2391362,2391826-2392027,2392078-2392101,
2392234-2392408,2392482-2392683,2393897-2394036
Length = 395
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -2
Query: 483 YVESENIFEL*NVTELFEPLFGNILYRCSTFIGVTVILYYYS 358
+V N F +V E + FG IL+ CS +G+ I ++Y+
Sbjct: 268 FVAFRNYFVEKDVFEEIDYKFGEILHHCSRTVGIRKIYHHYN 309
>01_01_1164 +
9263990-9264409,9264498-9264603,9264825-9264877,
9265249-9265380,9266250-9266372
Length = 277
Score = 29.5 bits (63), Expect = 2.6
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
Frame = -3
Query: 647 AYINNSNP-----KLE--TVPYPYGMTWLQRNCI*GN*LLPATPFTWNSYFGITLNFTPT 489
AYI S+P KL + + YG+ W+ G ++P TW +YFG+T + +P
Sbjct: 179 AYIEKSSPFPTDGKLGWWSTGFSYGL-WIAALVASGFSVVPVASQTWKAYFGLTRSGSPK 237
Query: 488 SFT 480
++
Sbjct: 238 DYS 240
>03_02_0726 +
10722759-10722857,10722969-10723058,10723141-10723245,
10723597-10723698,10724721-10724805,10725281-10725365,
10725473-10725517,10725685-10728672,10728839-10729055,
10729193-10729765
Length = 1462
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 7/59 (11%)
Frame = -1
Query: 193 LITLIHYMGGSIRKDMSSKV-THLIAAAATGEKYRYAS------GFGLPVLARSWVDAC 38
+++++ MG K ++ V THLI GEKY A F + ++ W++ C
Sbjct: 131 IMSMVSLMGAQFSKSLNPDVVTHLICYKFEGEKYEAAKKAKLKFNFNIKLVNHRWLEDC 189
>10_08_0959 - 21813756-21814097,21814462-21814570,21814688-21814740,
21814849-21815049,21815320-21815433,21815513-21815671,
21816490-21816849,21816928-21817149,21817967-21818093,
21818887-21819023,21819169-21819292,21819665-21820174,
21820255-21820436,21820812-21820862,21821114-21821266,
21821339-21821437,21821519-21821861,21821957-21822030,
21822105-21823025,21823133-21823257,21823419-21823461,
21823574-21823762,21824814-21825074,21825228-21825387,
21826200-21826363,21826523-21827009,21827090-21827431,
21827519-21827836,21828001-21828041,21828136-21828388,
21829158-21829261,21830198-21830386,21830543-21831196,
21831320-21831610,21831739-21831882,21832107-21832205,
21832549-21832657,21832739-21832923,21833008-21833121,
21833270-21833401,21833483-21833815,21833945-21834436,
21834773-21834847,21834917-21835066,21835143-21835241,
21835463-21835547,21837188-21837375,21837513-21837647,
21837729-21837849,21838127-21838194,21838275-21838370,
21838450-21838554,21838665-21838980,21839053-21839142,
21840011-21840181,21840850-21841010,21841088-21841270,
21841839-21841940,21842515-21842632,21842704-21842798,
21842972-21843022,21843107-21843241,21843333-21843436,
21844249-21844414,21844649-21844773,21845220-21845316
Length = 4181
Score = 28.7 bits (61), Expect = 4.6
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -2
Query: 552 FARDSVHVEQLLWHNAKFYPHFIYV 478
FA D+V+ EQ++W ++ YP YV
Sbjct: 4118 FAEDAVYEEQIVWASSDAYPWGCYV 4142
>04_03_0534 - 16845094-16845511,16846180-16846211
Length = 149
Score = 28.7 bits (61), Expect = 4.6
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 35 PARVDPGAREHGQAEPGRVPVLLA 106
P + PG HG AEP + P++LA
Sbjct: 64 PPKERPGGGAHGSAEPPQTPLILA 87
>01_06_1427 + 37296883-37297588,37298504-37298658,37300596-37300955
Length = 406
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = -2
Query: 117 PQLRARSTGTRPGSACPCSRAPGSTRAGNGETT 19
P R R T P + P R P + AG G TT
Sbjct: 6 PSPRRRGRPTSPSGSPPLDRTPSAKAAGGGATT 38
>01_07_0126 -
41222916-41222942,41223120-41223190,41223478-41223560,
41223587-41223653,41223740-41223848,41224431-41224511,
41224671-41224940,41225035-41226510,41226832-41226908,
41227812-41227912,41229397-41229660,41230964-41231136
Length = 932
Score = 28.3 bits (60), Expect = 6.0
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = -1
Query: 184 LIHYMGGSIRKDMSSKVTHLIAAA-ATGEKYRYASGFGLPVLARSWVDACWERR 26
LIH+ G S+ +S + TH +A A A G+PV+ +W++ C E R
Sbjct: 699 LIHF-GLSVATTIS-EATHFVAEKFARTRNMLEAIATGIPVVTPAWLECCREAR 750
>06_01_0321 +
2328932-2328963,2329084-2329243,2329388-2329576,
2330406-2330517,2331395-2331474,2332022-2332132,
2332580-2332666,2332979-2333260,2333804-2333965
Length = 404
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/42 (28%), Positives = 20/42 (47%)
Frame = -1
Query: 172 MGGSIRKDMSSKVTHLIAAAATGEKYRYASGFGLPVLARSWV 47
MG R D +S T L+ A A K+R ++++ W+
Sbjct: 89 MGAEYRPDWTSDCTLLVCAFANTPKFRQVESNNGTIVSKDWI 130
>02_02_0354 + 9283886-9285505,9287158-9287251,9287817-9289915
Length = 1270
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = -2
Query: 540 SVHVEQLLWHNAKFYPHFIYVESENIFEL*NVTELFEPLFGNILYR 403
S+H+E + W + FIY+E + + + + F P FG + R
Sbjct: 721 SLHLEGISWGTLPPFGQFIYLEELTLINIAGIRQ-FGPDFGGVTQR 765
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,377,365
Number of Sequences: 37544
Number of extensions: 343243
Number of successful extensions: 837
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 836
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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