Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6318
         (688 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46795-2|CAB54311.1|  932|Caenorhabditis elegans Hypothetical pr...    59   3e-09
Z46795-1|CAA86788.1|  924|Caenorhabditis elegans Hypothetical pr...    59   3e-09
Z75540-1|CAA99847.2| 1227|Caenorhabditis elegans Hypothetical pr...    30   1.3  
Z81532-3|CAC70088.2|  659|Caenorhabditis elegans Hypothetical pr...    29   2.4  
AC025716-11|AAK39605.1|  823|Caenorhabditis elegans Yeast mcm (l...    28   5.4  
Z81131-1|CAB03423.4|  464|Caenorhabditis elegans Hypothetical pr...    28   7.2  
Z72514-2|CAA96675.2|  422|Caenorhabditis elegans Hypothetical pr...    27   9.5  

>Z46795-2|CAB54311.1|  932|Caenorhabditis elegans Hypothetical
           protein T19E10.1b protein.
          Length = 932

 Score = 58.8 bits (136), Expect = 3e-09
 Identities = 26/58 (44%), Positives = 36/58 (62%)
 Frame = -1

Query: 193 LITLIHYMGGSIRKDMSSKVTHLIAAAATGEKYRYASGFGLPVLARSWVDACWERRDD 20
           L+ L+HYMGGS+RKD  S+ T++  AA    K +  S  G+P +   WV  CW+ RDD
Sbjct: 136 LVDLVHYMGGSVRKDTVSR-TNVFIAAKVEAKVQSISLVGVPTMRADWVTECWKHRDD 192


>Z46795-1|CAA86788.1|  924|Caenorhabditis elegans Hypothetical
           protein T19E10.1a protein.
          Length = 924

 Score = 58.8 bits (136), Expect = 3e-09
 Identities = 26/58 (44%), Positives = 36/58 (62%)
 Frame = -1

Query: 193 LITLIHYMGGSIRKDMSSKVTHLIAAAATGEKYRYASGFGLPVLARSWVDACWERRDD 20
           L+ L+HYMGGS+RKD  S+ T++  AA    K +  S  G+P +   WV  CW+ RDD
Sbjct: 136 LVDLVHYMGGSVRKDTVSR-TNVFIAAKVEAKVQSISLVGVPTMRADWVTECWKHRDD 192


>Z75540-1|CAA99847.2| 1227|Caenorhabditis elegans Hypothetical
           protein F37D6.1 protein.
          Length = 1227

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = -1

Query: 181 IHYMGGSIRKDMSSKVTHLIAAAATG-EKYRYASGFGLPVLARSWVDACWE 32
           I +M G +   +  + THL+   A   EKY+ A    + ++   W+D  WE
Sbjct: 200 IGWMCGVVGDALYHETTHLVTEKAEQTEKYKAAVNNSIKLMRIGWIDDLWE 250


>Z81532-3|CAC70088.2|  659|Caenorhabditis elegans Hypothetical
           protein F36F2.6 protein.
          Length = 659

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 17/58 (29%), Positives = 27/58 (46%)
 Frame = -1

Query: 202 QTYLITLIHYMGGSIRKDMSSKVTHLIAAAATGEKYRYASGFGLPVLARSWVDACWER 29
           +T +  L    G  I  D++  VTH++ A    +K   A+     V+   WV AC E+
Sbjct: 375 RTDIYRLCTQFGAVIVPDVTDDVTHVVGARYGTQKVYQANRLNKFVVTVQWVYACVEK 432


>AC025716-11|AAK39605.1|  823|Caenorhabditis elegans Yeast mcm
           (licensing factor) relatedprotein 4 protein.
          Length = 823

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +2

Query: 566 ICSFSVAMSYHKGRVQFPIWDCCCLYTQIFILAH 667
           +C+F +     KGR++ P+    C  T  F L H
Sbjct: 271 VCAFGIESEVDKGRIEEPVVCTNCSNTHCFQLVH 304


>Z81131-1|CAB03423.4|  464|Caenorhabditis elegans Hypothetical
           protein T24D1.2 protein.
          Length = 464

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -2

Query: 105 ARSTGTRPGSACPCSRAPGSTRAG 34
           A   G+  GS+CP  RAP + RAG
Sbjct: 405 AARKGSMEGSSCPLCRAPWTGRAG 428


>Z72514-2|CAA96675.2|  422|Caenorhabditis elegans Hypothetical
           protein T10B10.2 protein.
          Length = 422

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 175 YMGGSIRKDMSSKVTHLIAA 116
           Y GG +R+D  SK  H+I A
Sbjct: 236 YKGGEVRRDADSKYAHVIVA 255


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,069,173
Number of Sequences: 27780
Number of extensions: 307740
Number of successful extensions: 685
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)