Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6317
         (355 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B9.03 |||signal recognition particle receptor alpha subunit...    25   2.6  
SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    25   4.5  
SPCC1322.08 |srk1|mkp1|MAPK-activated protein kinase Srk1|Schizo...    24   6.0  
SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase Gpd3|...    24   6.0  
SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual           24   7.9  
SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase |Schiz...    24   7.9  

>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
           Srp101|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 14/23 (60%), Positives = 16/23 (69%)
 Frame = +2

Query: 167 VGVGQPL*LYSDLRTYIVIYVVD 235
           VG+GQ    YSDLRT  V +VVD
Sbjct: 524 VGIGQT---YSDLRTLSVDWVVD 543


>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -1

Query: 286 GRAHSPPDVKWLLEPMDIYN 227
           G  H P  V WLL P DIY+
Sbjct: 236 GPLHDPNTVMWLLRP-DIYS 254


>SPCC1322.08 |srk1|mkp1|MAPK-activated protein kinase
           Srk1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 580

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
 Frame = -2

Query: 201 SEYSYNGCPTPTTETHY--CFTAEIGRAVV 118
           SEYS + C  PT E  Y     A + +A+V
Sbjct: 78  SEYSRSKCKQPTNEKEYDKAIEALVAKAIV 107


>SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase
           Gpd3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 230 VDVHGLQ*PLNIRWAVSSS 286
           +DVH  + P NI+W+ S +
Sbjct: 74  IDVHNERDPANIKWSASGA 92


>SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 307

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = -1

Query: 355 TTHYRANWVPGPPSSFFFIA*MDGRAHSPPDVKWLLEPM 239
           T H    W     +S  F+  MDG ++S   V WL E +
Sbjct: 128 TQHQAYKWTR---TSRTFLCGMDGNSYSEVAVDWLFETL 163


>SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 603

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -2

Query: 189 YNGCPTPTTETHYCFTAEIGRA 124
           Y  CP  T+   +CF+A   +A
Sbjct: 517 YPACPLLTSRVRFCFSASHNKA 538


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,620,225
Number of Sequences: 5004
Number of extensions: 31888
Number of successful extensions: 61
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 105935336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)