Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6317
         (355 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z47808-2|CAA87770.1|  415|Caenorhabditis elegans Hypothetical pr...    31   0.31 
Z46794-6|CAA86776.1|  416|Caenorhabditis elegans Hypothetical pr...    29   1.2  
AF047652-2|AAC04393.3|  256|Caenorhabditis elegans Collagen prot...    26   8.7  
AF047652-1|AAO44912.1|  294|Caenorhabditis elegans Collagen prot...    26   8.7  

>Z47808-2|CAA87770.1|  415|Caenorhabditis elegans Hypothetical
           protein D2013.2 protein.
          Length = 415

 Score = 30.7 bits (66), Expect = 0.31
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -2

Query: 156 HYCFTAEIGRAVVPTCADSQEVLPPVKYKTKI 61
           H+C T   G AV  +C D+    PP+ Y+TKI
Sbjct: 317 HHCRTC--GSAVCGSCCDNWTTYPPMGYETKI 346


>Z46794-6|CAA86776.1|  416|Caenorhabditis elegans Hypothetical
           protein R06F6.6 protein.
          Length = 416

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -2

Query: 192 SYNGCPTPTTETHYCFTAEIGRAVVPTCADSQEVLPP 82
           S +  PTPT  T +    +I  A  PT ADS  + PP
Sbjct: 211 SSDSTPTPTQATQFDMPTQIQTASPPTTADS-AIFPP 246


>AF047652-2|AAC04393.3|  256|Caenorhabditis elegans Collagen protein
           107, isoform a protein.
          Length = 256

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -1

Query: 160 NALLLHGRNRQGGGTYLCG 104
           +A L+ GRN++ GGT  CG
Sbjct: 65  DASLIFGRNKRSGGTCGCG 83


>AF047652-1|AAO44912.1|  294|Caenorhabditis elegans Collagen protein
           107, isoform b protein.
          Length = 294

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -1

Query: 160 NALLLHGRNRQGGGTYLCG 104
           +A L+ GRN++ GGT  CG
Sbjct: 65  DASLIFGRNKRSGGTCGCG 83


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,312,737
Number of Sequences: 27780
Number of extensions: 194430
Number of successful extensions: 283
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 283
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 471339352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)