Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6313
         (617 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p...    29   0.71 
SPCC1442.12 |||CDP-diacylglycerol--serine O-phosphatidyltransfer...    28   0.94 
SPAC3C7.05c |mug191||alpha-1,6-mannanase |Schizosaccharomyces po...    28   1.2  
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ...    27   2.2  
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe...    27   2.2  
SPAC23A1.04c |mnl1||alpha mannosidase-like protein|Schizosacchar...    27   2.9  
SPAC20G8.01 |cdc17||ATP-dependent DNA ligase Cdc17|Schizosacchar...    26   5.0  
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M...    25   6.6  
SPAC19G12.13c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   8.8  

>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 595

 Score = 28.7 bits (61), Expect = 0.71
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = +2

Query: 467 DLPPDPACPNALRKH--RFCPSCERKTKRDARNIPKVFEKLIMKSEIVSEQN 616
           DLPPDP+ PNA         P  E   K++   IP    KL+ +S + +E+N
Sbjct: 139 DLPPDPSNPNATSSSPPPLTPILE-LIKQNNFCIPSPCRKLVWQSLVSAERN 189


>SPCC1442.12 |||CDP-diacylglycerol--serine O-phosphatidyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 250

 Score = 28.3 bits (60), Expect = 0.94
 Identities = 15/27 (55%), Positives = 18/27 (66%)
 Frame = +3

Query: 81  LMVLSCVMVTLS*LKLPKQTFLHWSLK 161
           L VLS + +T   LK+PK TFL  SLK
Sbjct: 222 LFVLSGIAMTSKKLKVPKSTFLLHSLK 248


>SPAC3C7.05c |mug191||alpha-1,6-mannanase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 15/70 (21%), Positives = 28/70 (40%)
 Frame = +3

Query: 24  GLVSLLKLMPQKYITKKLKLMVLSCVMVTLS*LKLPKQTFLHWSLKLYTCGKKSLTRNRA 203
           GL++    MP   + K  + MVL      +  L++PK+   + +  LY    +       
Sbjct: 307 GLMTFSYAMPSSALAKPAQKMVLDQADFLMKYLRIPKEGLYYRNFGLYKLSPELTASFNK 366

Query: 204 IFTEKSSYEP 233
            F     ++P
Sbjct: 367 FFNANKQFQP 376


>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 803

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +2

Query: 74  VEIDGAELCNGDFVMIETSQTNIPTLVAKVVYMWK 178
           V IDG  L  GD+V+I     +   +V+++  +WK
Sbjct: 346 VSIDGTLLNVGDWVLIRNPADSSKPIVSQIYRIWK 380


>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +2

Query: 293 CHGAPLSSILRKANIERK 346
           CHG P+ S   KAN ERK
Sbjct: 126 CHGLPIESKAIKANAERK 143


>SPAC23A1.04c |mnl1||alpha mannosidase-like
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +3

Query: 153 SLKLYTCGKKSLTRNRAIFTEKSSYEPQTQ 242
           SL LYT G +S+  N  +F     YE  T+
Sbjct: 595 SLFLYTAGAESINENDTVFLTDPDYETFTR 624


>SPAC20G8.01 |cdc17||ATP-dependent DNA ligase
           Cdc17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 768

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +2

Query: 398 HFEDDGRTYFYSKYYDRFTSRFEDL 472
           HF +DG+ Y +S+  +  + R+ D+
Sbjct: 425 HFTEDGKFYVFSRNSENMSVRYPDI 449


>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 663

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +2

Query: 323 RKANIERKEMSADWFKLGGKEVDDEHFED 409
           ++A ++  E  A+W ++ G++   E FED
Sbjct: 596 KQAVLDAVEDVAEWLEIHGEDASKEEFED 624


>SPAC19G12.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 249

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 120 LKLPKQTFLHWSLKLYTCGKKSLTR 194
           L L K+T  + +LKLY+C K  + R
Sbjct: 126 LLLNKETLNNEALKLYSCAKAGICR 150


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,392,677
Number of Sequences: 5004
Number of extensions: 48304
Number of successful extensions: 165
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)