Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6311
         (754 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC926.05c |||diphthamide biosynthesis protein Dph4 |Schizosacc...    28   1.2  
SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyce...    28   1.6  
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual      27   3.8  
SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces pomb...    26   5.0  
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch...    26   6.6  
SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomy...    25   8.8  
SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex ...    25   8.8  
SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc...    25   8.8  

>SPAC926.05c |||diphthamide biosynthesis protein Dph4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 139

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 20/72 (27%), Positives = 32/72 (44%)
 Frame = +2

Query: 299 HYTDQDKDYNAAYTADEYNSLVRTVLLRLIEKALATLTNRLHITTIDQLKKFRDYLNSDA 478
           HY+  +      YT DE     R  LL           + ++  TIDQ+K+    L+S+ 
Sbjct: 3   HYSVLNLKDGKTYTDDEIKEAYRKALLLFHPDKCKEKPSVVY--TIDQVKEAYQVLSSEK 60

Query: 479 DAGEFQIFLNQE 514
           D  ++QI   +E
Sbjct: 61  DRQQYQIKQEEE 72


>SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 578

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 16/73 (21%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
 Frame = +2

Query: 488 EFQIFLNQEDCVMLKN-LSNLASKFFNVRCVADTLEVMLEALRNNIELVQPESDAVRRIV 664
           E   + N  + V +   + ++ S F   + +  TLE  +E L        P  +++++ V
Sbjct: 106 EKNFYKNLNEYVFISGEVESMTSDFKKFQSLLKTLETDIEGLNLVDHTHDPSDESIKQTV 165

Query: 665 IKMTQEIKGFDHA 703
            ++   I+G D A
Sbjct: 166 QRLRSSIEGLDEA 178


>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 166

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 21/80 (26%), Positives = 38/80 (47%)
 Frame = +2

Query: 470 SDADAGEFQIFLNQEDCVMLKNLSNLASKFFNVRCVADTLEVMLEALRNNIELVQPESDA 649
           SD DA + Q    +E   M + ++ + ++   +R + + L+   EALRN+ E +  +S  
Sbjct: 2   SDQDALDTQ---EKELLEMKERVAEMEAEAAKLRAMQEQLDNETEALRNDKESIDAQSVY 58

Query: 650 VRRIVIKMTQEIKGFDHARC 709
           V  +   +T E      A C
Sbjct: 59  VGNVDYSVTPEELQSHFASC 78


>SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 300

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -1

Query: 130 EERLRQFVAALNTLPLPVLFRTLPCRAMIFYNAFFKKSINF 8
           E+ + +FV  +  LPL VL  TL   ++   N F   ++ F
Sbjct: 194 EDAVVEFVLTILVLPLTVLILTLSFNSVSSENMFLMMTVQF 234


>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1374

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
 Frame = +3

Query: 75  RTGSGKVLRAATNCRKRSSEQ-----ASADVRSTMLLLIVPTP-IFPRHLAIRFQVPARR 236
           RTG+GK L A    +++  EQ     ++ + +   + L+   P +F +   IR Q+PA+ 
Sbjct: 33  RTGAGKTLLAVKLIKQKLEEQILIQESNLEHKKISVFLVNKVPLVFQQAEYIRSQLPAKV 92

Query: 237 G 239
           G
Sbjct: 93  G 93


>SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 607

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +2

Query: 464 LNSDADAGEFQIFLNQEDCVMLKNLSNLASKFFNV 568
           LNS+ DAG F  F N+ D    K +    +   N+
Sbjct: 528 LNSEIDAGYFDDFTNENDMSKYKEVHEKQAAIANM 562


>SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex
           subunit Orp3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +2

Query: 530 KNLSNLASKFFNVRCVADTLEVMLEALRNNIEL 628
           K LSN+ +K FN++   + LE +  ++  ++ L
Sbjct: 221 KFLSNVKTKVFNMKASTEILESLFTSIEESLSL 253


>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 688

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = +2

Query: 152 PQYDVVVNRADANISTAFSDPLPGSSAPRYMYESSESDTYMEPARHT 292
           PQ+ +   + + N +T+ +       AP+Y+Y SS S +  +P   T
Sbjct: 55  PQHLLSHLQKEENSNTSKASSSEDEIAPKYLYPSSPSKSTKKPHNET 101


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,822,238
Number of Sequences: 5004
Number of extensions: 54226
Number of successful extensions: 187
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)