Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-6311
(754 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308... 34 0.11
02_05_0220 - 26885502-26885561,26885940-26886739,26887055-268874... 30 2.3
10_06_0033 + 9865963-9866090,9868173-9868253,9868358-9868375,986... 29 4.0
06_03_1325 - 29334401-29334859,29335163-29335857,29336538-293367... 29 5.2
08_02_1277 + 25823835-25825113,25825201-25825418,25825501-258257... 28 6.9
05_03_0248 + 10942363-10942612,10942702-10943345,10944301-109448... 28 6.9
04_04_0379 + 24828928-24829258,24829945-24829996,24830366-24830546 28 6.9
03_05_0140 + 21193956-21193982,21194502-21194919,21195006-21195517 28 6.9
02_05_0877 + 32403363-32404662,32406545-32406630,32406709-324070... 28 6.9
02_02_0647 - 12613356-12614040,12615034-12615219,12617168-12617475 28 9.2
01_03_0303 + 14792842-14792949,14793659-14793760,14794657-147948... 28 9.2
>01_01_0409 -
3084821-3084988,3085069-3085155,3085270-3085476,
3085904-3085985,3086085-3086275,3086410-3086616,
3086709-3086871,3087905-3087960,3088035-3088148,
3088599-3089807
Length = 827
Score = 34.3 bits (75), Expect = 0.11
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -3
Query: 353 CTRRQCTPRCSPCPDRCNVRRYVGRVPCTCP 261
C RR C C+PCP+ C+ R G C P
Sbjct: 427 CRRRCCEGDCAPCPEVCDKRLRCGNHKCLSP 457
>02_05_0220 - 26885502-26885561,26885940-26886739,26887055-26887421,
26887942-26888055,26888132-26888228,26889115-26889235,
26889306-26889390,26889494-26889643,26889871-26889987,
26890123-26890221,26890439-26890495,26890581-26890664,
26890759-26890828,26891015-26891169,26891557-26892095,
26892327-26892393,26892436-26892984,26893574-26893768,
26894485-26894569,26895822-26896441,26897154-26897486,
26897552-26897616,26897868-26897955,26898250-26898331,
26898720-26898796,26899152-26899256,26899496-26899630,
26900199-26900888,26901474-26902261,26902990-26904673
Length = 2825
Score = 29.9 bits (64), Expect = 2.3
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +2
Query: 254 SESDTYMEPARHTAEHYTDQDKD 322
S+SD+YM+ A T+ Y QDKD
Sbjct: 2049 SDSDSYMDDAASTSGQYDQQDKD 2071
>10_06_0033 +
9865963-9866090,9868173-9868253,9868358-9868375,
9869257-9869374,9869724-9869795,9870049-9870066,
9870231-9870551,9870652-9870760,9871562-9871736,
9871761-9871828,9873147-9873227,9873541-9873767
Length = 471
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -3
Query: 650 RHRFQAAPTQYYYEELPTLPLTCRPRNE 567
RH+F ++ LPTLP+T PR E
Sbjct: 292 RHKFLRMLLPFWSSALPTLPVTAPPRKE 319
>06_03_1325 -
29334401-29334859,29335163-29335857,29336538-29336750,
29338791-29339472,29339781-29340020
Length = 762
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/38 (36%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Frame = -3
Query: 371 PS*PGNCTRRQ-CTPRCSPCPDRCNVRRYVGRVPCTCP 261
P PG CT C P CPD + G C+CP
Sbjct: 300 PYLPGGCTDIDVCAPGNDGCPDGMICSNFPGGHNCSCP 337
>08_02_1277 +
25823835-25825113,25825201-25825418,25825501-25825724,
25826468-25827080,25827735-25827775,25830549-25831191,
25832595-25834012,25834110-25834251,25834415-25834522,
25835346-25835558,25835643-25835753,25836099-25836293,
25836555-25836695,25836835-25836909
Length = 1806
Score = 28.3 bits (60), Expect = 6.9
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = +2
Query: 467 NSDADAGEFQIFLNQEDCVMLKNLSNLASKFFNVRCVADTLEVMLEALR 613
N++ G F ++LN+ + + + ++ S+F + A + VMLEA R
Sbjct: 369 NAEETPG-FTVYLNRRPASLAEAMKDIDSQFLGICDAAKEISVMLEASR 416
>05_03_0248 +
10942363-10942612,10942702-10943345,10944301-10944816,
10945085-10945237,10945545-10945637
Length = 551
Score = 28.3 bits (60), Expect = 6.9
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +2
Query: 140 ERRRPQYDVVVNRADANISTAFSDPLPGSSA 232
E +P Y VV DA+ + DPLPGS A
Sbjct: 96 ENGQPTYKVVHRVTDADNNLRAGDPLPGSPA 126
>04_04_0379 + 24828928-24829258,24829945-24829996,24830366-24830546
Length = 187
Score = 28.3 bits (60), Expect = 6.9
Identities = 19/73 (26%), Positives = 27/73 (36%)
Frame = +2
Query: 140 ERRRPQYDVVVNRADANISTAFSDPLPGSSAPRYMYESSESDTYMEPARHTAEHYTDQDK 319
++ RP + R T +DP+ S E +SD E + Y D D
Sbjct: 116 DKARPTSSIGEFRNGVESETVEADPITHSEEQNNE-EEEDSDKDEEDSESDGAEYMDTDD 174
Query: 320 DYNAAYTADEYNS 358
D N D Y+S
Sbjct: 175 DNNTESDEDTYDS 187
>03_05_0140 + 21193956-21193982,21194502-21194919,21195006-21195517
Length = 318
Score = 28.3 bits (60), Expect = 6.9
Identities = 21/71 (29%), Positives = 29/71 (40%)
Frame = +2
Query: 221 GSSAPRYMYESSESDTYMEPARHTAEHYTDQDKDYNAAYTADEYNSLVRTVLLRLIEKAL 400
G P + S D + R+T Y N T + S +R VLL +IEKA
Sbjct: 44 GQKDPEVVLLSKFEDDHYNRVRYTLASYI-----INENSTGEVKFSPMRRVLLEMIEKAF 98
Query: 401 ATLTNRLHITT 433
+T+ H T
Sbjct: 99 STINLETHTGT 109
>02_05_0877 + 32403363-32404662,32406545-32406630,32406709-32407077,
32407174-32407257,32407362-32407784,32408368-32408434,
32409238-32409430,32409577-32409680,32409787-32409990,
32410174-32410427,32410511-32410735,32410812-32411033,
32411109-32411162,32411337-32411402,32411496-32411633,
32411979-32412032,32412334-32412393,32412975-32413340,
32413415-32413582
Length = 1478
Score = 28.3 bits (60), Expect = 6.9
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +3
Query: 51 ARHGSVRKRT-GSGKVLRAATNCRKRSSEQASADVR 155
ARH T GSG +L+ C K S EQ AD++
Sbjct: 1232 ARHAGFYMNTKGSGGILQHKAYCSKHSIEQKEADMQ 1267
>02_02_0647 - 12613356-12614040,12615034-12615219,12617168-12617475
Length = 392
Score = 27.9 bits (59), Expect = 9.2
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -2
Query: 642 LSGCTNSILLRRASNITSNVSATQRTLKNFDAKFDKF 532
L+ CT SILL+ N+ + + FD +FD+F
Sbjct: 200 LTTCTISILLKAVGEAFPNLKCLRLNHRWFDVQFDEF 236
>01_03_0303 + 14792842-14792949,14793659-14793760,14794657-14794800,
14794906-14794986,14795078-14795147,14795267-14795337,
14795427-14795594,14796030-14796074,14796449-14796511,
14796594-14796869,14797858-14797971,14798099-14798225,
14798315-14798484,14798743-14798841,14799577-14799630,
14801487-14801522,14801741-14801844,14801952-14802186,
14802377-14802609,14802846-14803346,14803422-14803716,
14805796-14805881,14806952-14807064,14807303-14807385,
14808014-14808866,14809215-14809364,14809963-14811146
Length = 1854
Score = 27.9 bits (59), Expect = 9.2
Identities = 10/28 (35%), Positives = 13/28 (46%)
Frame = -3
Query: 341 QCTPRCSPCPDRCNVRRYVGRVPCTCPI 258
+C SPCP R G C+CP+
Sbjct: 1414 ECEQNQSPCPKGATCRNTEGWYHCSCPV 1441
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,512,717
Number of Sequences: 37544
Number of extensions: 364514
Number of successful extensions: 1124
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1095
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1124
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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