Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6311
         (754 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC004951-1|AAH04951.1|  359|Homo sapiens RNA binding motif prote...    32   1.9  
BC003503-1|AAH03503.1|  359|Homo sapiens RNA binding motif prote...    32   1.9  
AL591375-2|CAI12099.1| 1652|Homo sapiens NHS-like 1 protein.           31   3.4  
AL391669-2|CAI14157.1| 1652|Homo sapiens NHS-like 1 protein.           31   3.4  
X90761-1|CAA62284.1|  448|Homo sapiens HHa2 hair keratin type I ...    30   7.8  
X81419-1|CAA57179.1|  405|Homo sapiens hair type I acidic kerati...    30   7.8  

>BC004951-1|AAH04951.1|  359|Homo sapiens RNA binding motif protein
           4B protein.
          Length = 359

 Score = 32.3 bits (70), Expect = 1.9
 Identities = 16/39 (41%), Positives = 24/39 (61%)
 Frame = -2

Query: 240 YRGALEPGSGSLNAVEILASARLTTTSYCGRLRSPVQKS 124
           Y   L P SG+      +A+A  TT+SY GR RSP++++
Sbjct: 271 YDRHLLPNSGAAATSAAMAAAAATTSSYYGRDRSPLRRA 309


>BC003503-1|AAH03503.1|  359|Homo sapiens RNA binding motif protein
           4B protein.
          Length = 359

 Score = 32.3 bits (70), Expect = 1.9
 Identities = 16/39 (41%), Positives = 24/39 (61%)
 Frame = -2

Query: 240 YRGALEPGSGSLNAVEILASARLTTTSYCGRLRSPVQKS 124
           Y   L P SG+      +A+A  TT+SY GR RSP++++
Sbjct: 271 YDRHLLPNSGAAATSAAMAAAAATTSSYYGRDRSPLRRA 309


>AL591375-2|CAI12099.1| 1652|Homo sapiens NHS-like 1 protein.
          Length = 1652

 Score = 31.5 bits (68), Expect = 3.4
 Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
 Frame = +2

Query: 146 RRPQYDVVVNRADANISTAFSDPLPGSSAPRYMYESSES-DTYMEPARHTAEHYTDQDKD 322
           RRP+     + +D N  T ++  LP  +    M + +++    + P   TA      D D
Sbjct: 176 RRPKTPASSDFSDLNTQTNWTKSLPLPTPEEKMRQQAQTVQADVVPINITASGTGQDDAD 235

Query: 323 YNAAYTADEYNSLVR 367
            ++ YT D Y++L R
Sbjct: 236 GHSVYTPDHYSTLGR 250


>AL391669-2|CAI14157.1| 1652|Homo sapiens NHS-like 1 protein.
          Length = 1652

 Score = 31.5 bits (68), Expect = 3.4
 Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
 Frame = +2

Query: 146 RRPQYDVVVNRADANISTAFSDPLPGSSAPRYMYESSES-DTYMEPARHTAEHYTDQDKD 322
           RRP+     + +D N  T ++  LP  +    M + +++    + P   TA      D D
Sbjct: 176 RRPKTPASSDFSDLNTQTNWTKSLPLPTPEEKMRQQAQTVQADVVPINITASGTGQDDAD 235

Query: 323 YNAAYTADEYNSLVR 367
            ++ YT D Y++L R
Sbjct: 236 GHSVYTPDHYSTLGR 250


>X90761-1|CAA62284.1|  448|Homo sapiens HHa2 hair keratin type I
           intermediate filament protein.
          Length = 448

 Score = 30.3 bits (65), Expect = 7.8
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
 Frame = +2

Query: 503 LNQEDCVMLKNLSNLASKFFNVRCVADTLEVMLEA---LRNNIELVQPESDA 649
           LNQ+     + L N  S   ++R   +TLE+ L+A   LR+++E    ES+A
Sbjct: 294 LNQQVATSSEQLQNYQSDIIDLRRTVNTLEIELQAQHSLRDSLENTLTESEA 345


>X81419-1|CAA57179.1|  405|Homo sapiens hair type I acidic keratin
           protein.
          Length = 405

 Score = 30.3 bits (65), Expect = 7.8
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
 Frame = +2

Query: 503 LNQEDCVMLKNLSNLASKFFNVRCVADTLEVMLEA---LRNNIELVQPESDA 649
           LNQ+     + L N  S   ++R   +TLE+ L+A   LR+++E    ES+A
Sbjct: 251 LNQQVATSSEQLQNYQSDIIDLRRTVNTLEIELQAQHSLRDSLENTLTESEA 302


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,709,668
Number of Sequences: 237096
Number of extensions: 1916760
Number of successful extensions: 8848
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8848
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9071127468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)