Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6306
         (729 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0076 + 20710482-20710670,20711313-20711547,20711664-207116...    29   3.8  
04_03_0362 + 14934236-14934541,14935549-14935647,14935736-149357...    28   8.7  

>09_06_0076 +
           20710482-20710670,20711313-20711547,20711664-20711689,
           20712000-20712293,20712603-20712728,20712827-20712896,
           20712992-20713182,20713394-20713519,20713878-20714279,
           20714364-20714758,20714861-20715315,20715403-20715524,
           20715653-20715693,20716026-20716129,20716363-20716576,
           20717667-20717780,20718576-20718612
          Length = 1046

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
 Frame = -1

Query: 684 RQLKFNSFT--YLAPVPCQVFNQMRHSKHTLNDKKIYFN 574
           R  K  +FT  YL P P  +F Q +  KH+ NDK+I+F+
Sbjct: 347 RAEKKTTFTEVYLLPAPPGLFGQGKR-KHSDNDKEIHFS 384


>04_03_0362 +
           14934236-14934541,14935549-14935647,14935736-14935798,
           14935878-14935940,14937242-14937362,14937472-14937872,
           14937968-14938141,14938252-14938570,14938659-14938735,
           14938808-14938877,14938951-14939007,14939100-14939314,
           14939436-14939561,14939649-14939944,14940032-14940203,
           14940300-14940398,14940471-14940602,14940692-14940792,
           14941391-14941580,14941819-14941842
          Length = 1034

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = -3

Query: 313 YTKHKKIPFCHKIKCAPLNKVYN-DGYVKNNNNEM 212
           Y  H   P C K+ C   N +YN    +K+NN ++
Sbjct: 704 YLGHSIFPDCCKVLCTQTNNLYNAKNMLKSNNLDL 738


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,361,561
Number of Sequences: 37544
Number of extensions: 286560
Number of successful extensions: 518
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 518
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)