Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6304
         (473 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3F6.01c |||serine/threonine protein phosphatase |Schizosacch...    30   0.16 
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    26   2.5  
SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual      25   4.5  
SPBC3B9.09 |vps36||RBZ zinc finger protein Vps36|Schizosaccharom...    25   4.5  
SPBC83.16c |||conserved fungal protein|Schizosaccharomyces pombe...    25   7.8  

>SPBC3F6.01c |||serine/threonine protein phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 30.3 bits (65), Expect = 0.16
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = -3

Query: 165 LGLGTPVTELVELDKEDIDVQPNPCISPLSFSPDLLSG 52
           LG    V E +ELD    +  P+P I P++++  LLSG
Sbjct: 435 LGAVIKVKEDMELDFHQFEAVPHPNIRPMAYANGLLSG 472


>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1096

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +1

Query: 7   SNCFANESTTGLESRPAEKIRRETQRADAWV 99
           S+C  +ES    ES PA K   E    D+W+
Sbjct: 299 SSCLLDESMVTGESVPARKFPLEDNSLDSWM 329


>SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 656

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = +2

Query: 293 KKNMFKLRVAHSHCYIHGSPYIRQSFYTGCGHEV 394
           K  +FK+      C I   P  R  FY G G+ +
Sbjct: 476 KPEVFKMACLRDLCNIFALPVPRTPFYAGFGNRI 509


>SPBC3B9.09 |vps36||RBZ zinc finger protein
           Vps36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 467

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +2

Query: 260 KFFCYVLIFDSKKNMFKLRVAHSHCYIHGSPYIRQS 367
           K   YV   D KKN  K++++      H S Y R S
Sbjct: 50  KHIFYVDSVDPKKNSLKIKISDIRDVQHTSRYFRSS 85


>SPBC83.16c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 563

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 266 FCYVLIFDSKKNMFKLRVAHS 328
           FC   I  S K+++KLR AHS
Sbjct: 116 FCSESIVTSVKSVYKLRKAHS 136


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,890,235
Number of Sequences: 5004
Number of extensions: 36585
Number of successful extensions: 72
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)