Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6304
         (473 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1076 - 30639835-30640898,30641613-30641915,30642008-306420...    30   1.1  
05_03_0614 - 16206005-16206586,16207585-16207608,16209746-162098...    27   5.8  
06_02_0270 - 13613853-13614153,13614233-13614403,13614486-136153...    27   7.7  

>04_04_1076 -
           30639835-30640898,30641613-30641915,30642008-30642068,
           30643076-30644380
          Length = 910

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = -1

Query: 137 SSNSTKRTSTCNLTHASAR*VSRRIFSAGR 48
           SS S KRTS+ + +H S+  V  R +S+GR
Sbjct: 590 SSRSAKRTSSASSSHGSSGSVEERPYSSGR 619


>05_03_0614 -
           16206005-16206586,16207585-16207608,16209746-16209879,
           16210703-16210832
          Length = 289

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
 Frame = -3

Query: 183 TPSALILGLGTPVTEL----VELDKEDIDVQPNPCISPLSF 73
           T SAL L   + +TEL      +  +D+D+Q NP +  LSF
Sbjct: 247 TTSALALTSSSNLTELDIFRTHIKAKDLDLQYNPALEKLSF 287


>06_02_0270 -
           13613853-13614153,13614233-13614403,13614486-13615318,
           13615401-13615746,13615940-13616127,13616238-13616408
          Length = 669

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -3

Query: 195 PLH*TPSALILGLGTPVTELVELDKEDIDVQPNPCIS-PLSFSP 67
           PLH  P+  I+ LG      ++  KEDI V+  P  S P+  +P
Sbjct: 293 PLHVPPNDEIMTLGDARKTFIQWPKEDIVVKMTPRPSRPMELTP 336


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,445,600
Number of Sequences: 37544
Number of extensions: 233836
Number of successful extensions: 417
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 417
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 967140324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)