Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6304
         (473 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66500-4|CAA91305.2|  630|Caenorhabditis elegans Hypothetical pr...    29   1.7  
U41021-9|AAQ81276.1|  408|Caenorhabditis elegans Temporarily ass...    28   3.0  
U41021-8|AAQ81275.1|  406|Caenorhabditis elegans Temporarily ass...    28   3.0  

>Z66500-4|CAA91305.2|  630|Caenorhabditis elegans Hypothetical
           protein T05C12.4 protein.
          Length = 630

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 26/76 (34%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
 Frame = +2

Query: 197 SYTNSMNYFEL*KPSLVIFISKFFCYV---LIFDSKKNMFKLRVAHSHCYIHGS-PYIRQ 364
           SY  ++ YF L    LV      FC+V   L+F      F L VA + CYI+   P  R 
Sbjct: 413 SYNPNLTYFSLHSRLLVFICRLAFCFVALALLFVILPTFF-LVVAGTGCYIYSDHPMNRS 471

Query: 365 SFYTGCGHEVVLT*AI 412
           S     G  V +  AI
Sbjct: 472 SVSNKIGKVVSVNAAI 487


>U41021-9|AAQ81276.1|  408|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 24, isoform b protein.
          Length = 408

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -2

Query: 463 IGRIGYRAPPRVFFFFFY 410
           IG  G+ APP VF FFF+
Sbjct: 348 IGAFGHEAPPLVFKFFFW 365


>U41021-8|AAQ81275.1|  406|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 24, isoform a protein.
          Length = 406

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -2

Query: 463 IGRIGYRAPPRVFFFFFY 410
           IG  G+ APP VF FFF+
Sbjct: 346 IGAFGHEAPPLVFKFFFW 363


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,502,410
Number of Sequences: 27780
Number of extensions: 203604
Number of successful extensions: 472
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 472
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 860942358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)