Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6304
         (473 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   6.7  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   8.9  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    21   8.9  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   8.9  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   8.9  

>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 313 SGGAFTLLYPWESIHP 360
           SGG+F  LYP  +  P
Sbjct: 388 SGGSFPSLYPMATTSP 403


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +3

Query: 294 KKICLNFGWRIHTVI 338
           K + LNFGW++  +I
Sbjct: 391 KLVLLNFGWQMICLI 405


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -3

Query: 114 IDVQPNPCISPLSFSPDL 61
           IDV PN C +  ++  DL
Sbjct: 177 IDVDPNNCDNTYAYISDL 194


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = +2

Query: 317 VAHSHCYIHGSPYIRQS 367
           + H H +IH +P+   S
Sbjct: 419 MGHGHSHIHATPHHHHS 435


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 96  PCISPLSFSPDLLSGSRFQSGSRFI 22
           P +S  S SP+L +  RF+  +R I
Sbjct: 237 PLVSFFSTSPELSNKQRFEYFTRTI 261


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,641
Number of Sequences: 438
Number of extensions: 2368
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12805416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)