Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6302
         (824 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0416 + 13684604-13688050                                         29   3.4  
01_05_0201 - 19225597-19225890,19227832-19228030,19228133-192283...    29   4.5  

>05_03_0416 + 13684604-13688050
          Length = 1148

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -1

Query: 281  HISNPRCL*LVEFKLSGPRCGWHLHDYFNIFIFFN 177
            H + PR   L   K++G  CGW    Y +   +FN
Sbjct: 940  HSAVPRLKELTIIKMTGSSCGWDFLQYLDALEYFN 974


>01_05_0201 -
           19225597-19225890,19227832-19228030,19228133-19228321,
           19228475-19228785,19228899-19229030
          Length = 374

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
 Frame = +3

Query: 513 VHPSKQKKDLS*H*TTLDYRNLIN---RRHFLVQYYGVRDW*DLF*YKRIINGKINFHAT 683
           + PSK +++     T   ++ L+N   R+H L + Y +      F  ++   G+I   AT
Sbjct: 40  LQPSKVRENA--RFTMSPFKRLLNLGFRKHMLTEQYAIHPSIWQFRNEKFYEGRITNGAT 97

Query: 684 VFLIYTT 704
           VFL+ TT
Sbjct: 98  VFLLNTT 104


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,938,888
Number of Sequences: 37544
Number of extensions: 412741
Number of successful extensions: 596
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 596
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2268190812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)