Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6301
         (518 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|c...    27   1.7  
SPAC1687.20c |mis6||inner centromere protein Mis6|Schizosaccharo...    25   6.8  
SPBC1652.02 |aap1|SPBC16A3.20c|APC amino acid transporter|Schizo...    25   6.8  
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc...    25   9.0  
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    25   9.0  

>SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 603

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
 Frame = +2

Query: 86  WITQNYTKFKLS*EKLYAIGLLAINSMLGILRMEISVKWVLKKLVSNLTKLESQLT---- 253
           W T  Y  F    E+LYA G  + N+ L      +++  + K+L ++ T  ES  +    
Sbjct: 178 WPTFVYNDFMYEFERLYAFGFHSNNAWLISFYSILALSSIRKRLGNSKTLAESLFSTAWV 237

Query: 254 -LKKNCFIITGHSGRVRKL 307
            ++K+ F +T    +V+ L
Sbjct: 238 FVQKSDFFLTPSIDKVQAL 256


>SPAC1687.20c |mis6||inner centromere protein
           Mis6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 16/70 (22%), Positives = 32/70 (45%)
 Frame = +2

Query: 200 WVLKKLVSNLTKLESQLTLKKNCFIITGHSGRVRKLFPVSCSLFKKRPLVAVMAIESQFQ 379
           W+ + L   +  + +  TL + C +IT H+  +   F    SL  +  L  +  +  +  
Sbjct: 422 WLFRMLNLRIASMGNNHTLLEKCLLITNHATFLVSHFSWDVSLAYQ--LSRLFQLYYKIL 479

Query: 380 KKTKKRIDSN 409
            K +K+I+ N
Sbjct: 480 TKIRKQIEPN 489


>SPBC1652.02 |aap1|SPBC16A3.20c|APC amino acid
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 594

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -1

Query: 260 FLKSIDFLIWLGLRPIFLKPTLQ 192
           FL    F+ +L + PIF+KPT Q
Sbjct: 502 FLGPSVFIAYLLISPIFVKPTFQ 524


>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1233

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +2

Query: 197 KWVLKKLVSNLTKLESQLTL 256
           K V K+LVS LTKL   +TL
Sbjct: 900 KLVGKRLVSELTKLSGNITL 919


>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +2

Query: 332 KKRPLVAVMAIESQFQKKTKKRIDSND 412
           +++ +VA  AIE  +QKKT   ID ++
Sbjct: 126 EQQKVVAANAIEELYQKKTALEIDLSE 152


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,928,620
Number of Sequences: 5004
Number of extensions: 37705
Number of successful extensions: 69
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)