Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6301
         (518 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    26   0.20 
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   5.7  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   7.6  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 26.2 bits (55), Expect = 0.20
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
 Frame = +2

Query: 227 LTKLESQLTLKKNCFIITG-HSGRVRKLFPVSCS-LFKKRPLVAVMAI 364
           +T L  + TLKK C +++G  S +VR +F  S + + K +P   V  +
Sbjct: 337 VTALIQRGTLKKGCLLVSGIASAKVRSMFNDSGNPILKAKPSEVVQIL 384


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +2

Query: 65  QFFFCNVWITQNYTKFKL 118
           Q    NVW+ Q +  +KL
Sbjct: 65  QIMTTNVWVEQEWNDYKL 82


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +2

Query: 65  QFFFCNVWITQNYTKFKL 118
           Q    NVW+ Q +  +KL
Sbjct: 78  QVMTTNVWVEQRWNDYKL 95


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,289
Number of Sequences: 438
Number of extensions: 2559
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14477538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)