Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6300
         (718 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos...    29   0.66 
SPCC4B3.02c |||Golgi transport protein Got1 |Schizosaccharomyces...    28   1.2  
SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces pomb...    28   1.5  
SPBC27.02c |ask1|mug181|DASH complex subunit Ask1|Schizosaccharo...    28   1.5  
SPBC1289.14 ||SPBC8E4.10c|adducin|Schizosaccharomyces pombe|chr ...    27   2.7  
SPAC6G10.07 |||nuclear cap-binding complex large subunit |Schizo...    26   4.7  
SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M...    26   4.7  
SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|c...    26   4.7  
SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr 3|||M...    26   6.2  

>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 647

 Score = 29.1 bits (62), Expect = 0.66
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = -2

Query: 423 SSRRYRGRVSRLYTEQAPSLPPQQF 349
           + R  RG+V RLYTE+A SL  ++F
Sbjct: 354 AGRTMRGKVFRLYTEKAYSLMKEEF 378


>SPCC4B3.02c |||Golgi transport protein Got1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 129

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 25/92 (27%), Positives = 45/92 (48%)
 Frame = -3

Query: 695 WDLFLDSVGLGNGHFHFIRDFLLNGVGSGHFDFDFVRLVNVDLDFIRYFLFNGVGLRYVY 516
           W   L  +G+G     F+  F++ G+    FD   + L N+ L F  +F+  G      +
Sbjct: 2   WLSDLQKIGVGTTALGFL--FMIMGIFM-FFDGPLLSLGNLLLVF-GFFMIAGFSKSVSF 57

Query: 515 WVFDVFLDGKGNFLFNGVGLRYGHFHLIGYFL 420
           ++    + G  +F F+G+ L   HF +IG+F+
Sbjct: 58  FLRKDRMLGSISF-FSGLLLTLFHFPIIGFFV 88


>SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 406

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -2

Query: 153 SLHRYLRNYVLHKIL--CHRCPFCLVSSLRLPSVCLSPPW 40
           SL     N V H +L  C +     +SS ++P VC+SP W
Sbjct: 194 SLQMTEENPVSHAVLYDCSQETLKKISSAQVPIVCVSPKW 233


>SPBC27.02c |ask1|mug181|DASH complex subunit
           Ask1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 307

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +1

Query: 448 PYLSPTPLKRKFPLPSRNTSNTQY 519
           P++SP+P+  K  +PS N  N+ +
Sbjct: 212 PFVSPSPISMKMDMPSLNDRNSSH 235


>SPBC1289.14 ||SPBC8E4.10c|adducin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 324

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -3

Query: 494 DGKGNFLFNGVGLRYGHFHLIGYFLLDGIGDV 399
           DG  +FL N  GLRYG         +D  G++
Sbjct: 110 DGTASFLINPYGLRYGEITASSLIKVDEDGNI 141


>SPAC6G10.07 |||nuclear cap-binding complex large subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 780

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 716 NFVFHWNWDLFLDSVGLGNGH 654
           NF FHW W+ ++  V L + H
Sbjct: 451 NFNFHWKWNEWIPDVELDDLH 471


>SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1220

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -3

Query: 668  LGNGHFHFIRDFLLNGVGSGHFDFDF 591
            L  G F  IR  + NG G G F+FDF
Sbjct: 1161 LTQGSFLPIRLIVANGGGKGGFNFDF 1186


>SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 683

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = +2

Query: 503 RQIPSIRT*ALHR*KESTL*SQGPR*QALRSQSQS 607
           + +PS  + ALH  ++ST  S G R + LR +SQS
Sbjct: 386 KPVPSKLSTALHAARKSTDGSLGSRVKVLREESQS 420


>SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 609

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 644 IRDFLLNGVGSGHFDFDFV 588
           +R  + NG G G FDF FV
Sbjct: 557 VRFVVANGAGKGGFDFSFV 575


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,176,952
Number of Sequences: 5004
Number of extensions: 42865
Number of successful extensions: 148
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)