Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6300
         (718 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81453-7|CAB03797.2|  457|Caenorhabditis elegans Hypothetical pr...    31   1.1  
AF264764-1|AAQ14296.1|  457|Caenorhabditis elegans sterol reduct...    31   1.1  
U46675-2|AAB52644.1|  125|Caenorhabditis elegans Hypothetical pr...    28   5.8  
Z75531-12|CAA99806.4|  348|Caenorhabditis elegans Hypothetical p...    28   7.7  
AF067609-11|AAC17532.2|  252|Caenorhabditis elegans Hypothetical...    28   7.7  

>Z81453-7|CAB03797.2|  457|Caenorhabditis elegans Hypothetical
           protein B0250.9 protein.
          Length = 457

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
 Frame = -3

Query: 713 FVFHWNWDLFLDSVGLGNGHFHFIR---DFLLNGV 618
           F FHWN DLFL+S+      F F R   DF+L  +
Sbjct: 264 FQFHWNEDLFLNSLDSKRCDFGFYRIWADFVLGPI 298


>AF264764-1|AAQ14296.1|  457|Caenorhabditis elegans sterol reductase
           protein.
          Length = 457

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
 Frame = -3

Query: 713 FVFHWNWDLFLDSVGLGNGHFHFIR---DFLLNGV 618
           F FHWN DLFL+S+      F F R   DF+L  +
Sbjct: 264 FQFHWNEDLFLNSLDSKRCDFGFYRIWADFVLGPI 298


>U46675-2|AAB52644.1|  125|Caenorhabditis elegans Hypothetical
           protein F35A5.5 protein.
          Length = 125

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = +3

Query: 552 VPYEVKVHVDKPYEVKVKVPTPYTVEKKIPYEVKVPVP 665
           +P    V V  P    V VP P  +   +P  V VPVP
Sbjct: 7   IPIPAPVPVPAPVPQPVPVPMPMPMPMPMPMPVPVPVP 44


>Z75531-12|CAA99806.4|  348|Caenorhabditis elegans Hypothetical
           protein C54D10.6 protein.
          Length = 348

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = -3

Query: 155 VAFIATSEIMSSIRSYVIDAPFVLFLLFDCLRCAFLLLG 39
           +  IAT  ++S+I + ++  P+ +F    C RC  +  G
Sbjct: 283 LCLIATHGLLSTITTIMVHKPYRVFFFILCRRCLLMPAG 321


>AF067609-11|AAC17532.2|  252|Caenorhabditis elegans Hypothetical
           protein C23H5.1 protein.
          Length = 252

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 659 GHFHFIRDFLLNGVGSGHFDFDFVR 585
           GH    ++ L  G G+GH+ FDF+R
Sbjct: 32  GHILVGKEVLDVGCGNGHYSFDFLR 56


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,155,382
Number of Sequences: 27780
Number of extensions: 248991
Number of successful extensions: 817
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 811
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)