Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6297
         (688 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy...    30   0.36 
SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase Ubp3|Schizosacc...    28   1.5  
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb...    27   2.5  
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos...    27   3.4  
SPAC2G11.04 |||RNA-binding protein, G-patch type |Schizosaccharo...    26   5.9  
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|...    25   7.8  

>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 606

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
 Frame = +2

Query: 419 LETGTSDPKKITKWVDVNNEEWIQDGSAQSSTPVKIDTLQFVPKNTNPKEFKKLQQQIKE 598
           LE   ++PKK+ +   + NE W    S Q     K +T +   K  + KEF K Q+    
Sbjct: 498 LEVEKTEPKKLARPAKIKNEAW----SKQKEVKEKRNTRR--EKRKSKKEFLKAQKNEAS 551

Query: 599 NRRADKI--SAGPQSHILEGVTWDESSKM 679
           N    +I   AG Q    + +  +ES  +
Sbjct: 552 NNLKQEIVSKAGAQETENDDLIDEESDAL 580


>SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase
           Ubp3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 512

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 224 RHPLIKNDVPRPKNDVEVPPAVSS 295
           RH L+KND   PK+D+++   + S
Sbjct: 249 RHYLLKNDERNPKSDIKISNGIKS 272


>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 779

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +2

Query: 92  TQRQMYEASRKPPADASKWRVGG 160
           ++RQ  EA+R+PP+D S   +GG
Sbjct: 156 SKRQKAEANREPPSDISLSDIGG 178


>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
           Vas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 950

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +2

Query: 518 VKIDTLQFVPKNTNPKEFKKLQQQIKE-NRRADKI 619
           +  DT+  VPK   P + KKL++ + +  ++ DKI
Sbjct: 873 ISSDTILLVPKKLYPSKRKKLRKNLDDLQKKLDKI 907


>SPAC2G11.04 |||RNA-binding protein, G-patch type
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 301

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 506 SSTPVKIDTLQFVPKNTNPKEFKK 577
           S T   +++LQF+P N  PK  KK
Sbjct: 52  SGTKDYLNSLQFLPSNFRPKTHKK 75


>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
            Abc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1469

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -2

Query: 573  LNSFGFVFFGTNCNVSILTGVL 508
            +N  G++FF  NC +S+  G+L
Sbjct: 1006 MNLSGWLFFSINCFLSVAGGIL 1027


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,594,682
Number of Sequences: 5004
Number of extensions: 50511
Number of successful extensions: 154
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)