Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-6297
(688 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0720 - 19008890-19009204,19009324-19009593 31 0.65
10_08_0906 - 21472490-21472732,21472947-21473271,21473351-214735... 29 2.6
07_03_0263 - 15951011-15951818,15952009-15952526,15952949-159531... 29 2.6
05_04_0297 + 19948851-19949286,19949779-19949885,19949928-19950011 29 2.6
05_04_0074 - 17677298-17677591,17679060-17679197,17682705-17683130 29 3.5
11_04_0399 - 17237152-17237628 28 6.0
05_05_0377 - 24498664-24500215,24500306-24500643 28 6.0
05_01_0054 + 379974-380215,380343-380556,381603-381892,382384-38... 28 6.0
02_05_0876 - 32399066-32399920 28 6.0
10_08_0010 - 14078740-14079270 28 8.0
10_05_0001 + 7702156-7702565,7702858-7702972,7704085-7704351,770... 28 8.0
04_01_0054 - 559672-560652 28 8.0
>04_03_0720 - 19008890-19009204,19009324-19009593
Length = 194
Score = 31.5 bits (68), Expect = 0.65
Identities = 19/44 (43%), Positives = 25/44 (56%)
Frame = -1
Query: 133 GGRLAGRLVHLSLRFVI*QDEVIQRRGC*LQLRVGGGGEQTRVQ 2
GGRL RL F + +++ GC +L VGGGGEQ RV+
Sbjct: 122 GGRLIQRLEAGWRGFAV-DNDLRLGDGCVFELLVGGGGEQERVE 164
>10_08_0906 -
21472490-21472732,21472947-21473271,21473351-21473598,
21473823-21474071
Length = 354
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +3
Query: 396 TSTRRWRFWRLAPATPRRSLSGWTLTTKS 482
+ +R RFW +PA+ RRSL ++ TKS
Sbjct: 150 SDSRDLRFWPTSPASFRRSLDAYSSETKS 178
>07_03_0263 -
15951011-15951818,15952009-15952526,15952949-15953197,
15953270-15953857
Length = 720
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Frame = +2
Query: 80 LDDETQRQMYEASRKPPADASKW---RVGGEEFEALMR-MLDNAGFRTGYIYRHPLIKND 247
L+D+ + + +S PP + ++ GE ++A++ +LD G+R G +Y +KN
Sbjct: 182 LEDDVEE--FASSGGPPRRVGTYNGAQMSGEGYQAIVDGLLDRRGYRRGLVYTRCQVKNQ 239
Query: 248 V 250
+
Sbjct: 240 I 240
>05_04_0297 + 19948851-19949286,19949779-19949885,19949928-19950011
Length = 208
Score = 29.5 bits (63), Expect = 2.6
Identities = 21/70 (30%), Positives = 36/70 (51%)
Frame = +3
Query: 435 ATPRRSLSGWTLTTKSGSKMARLNRVRPLKSIHCNSYRKIRTQRNLRSFNNRSKRIAART 614
++PRR GW T +SG+K + VR ++ R++ T R++ + + R+AA+
Sbjct: 6 SSPRRGSGGWQRTWRSGAKREDDDEVRDVE-------REMMT-RSVAQERDMATRLAAQE 57
Query: 615 R*APVLSPTS 644
R SP S
Sbjct: 58 RGTATSSPAS 67
>05_04_0074 - 17677298-17677591,17679060-17679197,17682705-17683130
Length = 285
Score = 29.1 bits (62), Expect = 3.5
Identities = 18/46 (39%), Positives = 22/46 (47%)
Frame = +1
Query: 301 LSARRGGAVQTRVVEERSGEDR*ANPLAELSERLPEGGGSGDWHQR 438
L GA RV E R+ ED + PL + LP GG GD +R
Sbjct: 51 LDMAASGAHPARVDEVRTFEDY-SRPLLDALAALPPAGGDGDDEER 95
>11_04_0399 - 17237152-17237628
Length = 158
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = +1
Query: 322 AVQTRVVEERSGEDR*ANPLAELSERLPEGGGSGDWHQRPQEDH*VGG 465
A T + R R +P+A + GGGSG W +R + VGG
Sbjct: 111 ATPTATIRRRRASSR-PDPVAAGAAGGIGGGGSGSWRRRRERGQVVGG 157
>05_05_0377 - 24498664-24500215,24500306-24500643
Length = 629
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +2
Query: 446 KITKWVDVNNEEWIQDGSAQSSTPVKIDTL 535
K KW N++WI G+A T D+L
Sbjct: 598 KCPKWCAGGNKQWISSGAAAKKTTTTCDSL 627
>05_01_0054 + 379974-380215,380343-380556,381603-381892,382384-382560,
382705-383481,383572-383645,383757-383819,383919-384007,
384106-384201,384319-384978,385613-385687,386422-386492,
386578-386635,386900-387104,387379-387869
Length = 1193
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +1
Query: 298 RLSARRGGAVQTRVVEERSGEDR*ANPLAELSERLPEGGGSGDWHQ 435
+LS T+ +EERS E N L E + R +GG +G H+
Sbjct: 926 KLSKLEKAIQDTKSIEERSLEQHAMNKLVERAYRKLKGGRTGSSHK 971
>02_05_0876 - 32399066-32399920
Length = 284
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = +1
Query: 574 EASTTDQRESPRGQDKRRSSVPHPRGGDLGR 666
+A SP K+RSS P PR GD R
Sbjct: 2 DAGAAPASPSPPRSSKKRSSRPKPRAGDAAR 32
>10_08_0010 - 14078740-14079270
Length = 176
Score = 27.9 bits (59), Expect = 8.0
Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +1
Query: 193 QRRLPHRLHLQASPHQERRAET*E*RGSSTSRV-VPRLSARRGG 321
QRRLP ++ PH R E S +R PR ARRGG
Sbjct: 66 QRRLPAHRLYRSHPHFRHRQPLQELHNSCNTRSRWPRRGARRGG 109
>10_05_0001 +
7702156-7702565,7702858-7702972,7704085-7704351,
7704397-7704588
Length = 327
Score = 27.9 bits (59), Expect = 8.0
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +2
Query: 89 ETQRQMYEASRKPPADASKW 148
ET+ MYEA +P DAS W
Sbjct: 260 ETRNMMYEAGWEPTGDASGW 279
>04_01_0054 - 559672-560652
Length = 326
Score = 27.9 bits (59), Expect = 8.0
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Frame = +2
Query: 389 SPNVYQKVEVLETGTSDPKKITKWVD---VNNEEWIQDGSAQSSTPVK 523
SPNV V V T+ P +T W++ V + W+ +A + P K
Sbjct: 157 SPNVGLNVTVSANRTAAPHGLTVWIEYSAVEHHLWVYVAAAGEARPAK 204
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,163,538
Number of Sequences: 37544
Number of extensions: 416192
Number of successful extensions: 1538
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1537
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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